Package: GeneSpring

Version: 2.5.0

Command: /home/biocbuild/1.9d/R/bin/R CMD check GeneSpring_2.5.0.tar.gz

RetCode: 0

Time: 21.3 seconds

Status: WARNINGS

CheckDir: GeneSpring.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/1.9d/Rpacks/GeneSpring.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'GeneSpring/DESCRIPTION' ... OK
* this is package 'GeneSpring' version '2.5.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  methods
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'GeneSpring' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GeneSpring-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneSpring-manual.tex ... OK
* checking GeneSpring-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/1.9d/Rpacks/GeneSpring.Rcheck/00check.log
for details

* Installing *source* package 'GeneSpring' ...
** R
** inst
** save image
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

[1] "GSint"
[1] "show"
** help
 >>> Building/Updating help pages for package 'GeneSpring'
     Formats: text html latex example 
  GSint                             text    html    latex   example
  GSint2BC                          text    html    latex   example
  GSload.exp                        text    html    latex   example
  GSload.genelist                   text    html    latex   example
  GSload.int                        text    html    latex   example
  GSsave.exp                        text    html    latex   example
** building package indices ...
* DONE (GeneSpring)