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Package 197/205OSArchBUILDCHECKBUILD BIN

twilight

1.9.2

Stefanie Scheid		Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  WARNINGS 
Windows Server 2003 x86_64 OK  WARNINGS  OK 
Windows XP i686 OK  WARNINGS skipped
Mac OS X (10.4.6) i686 OK [ WARNINGS ]
Package: twilight
Version: 1.9.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check twilight_1.9.2.tar.gz
RetCode: 0
Time: 413.6 seconds
Status: WARNINGS
CheckDir: twilight.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/1.9d/Rpacks/twilight.Rcheck'
* using R version 2.4.0 alpha (2006-09-07 r39185)
* checking for file 'twilight/DESCRIPTION' ... OK
* this is package 'twilight' version '1.9.2'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from
snow
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'twilight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating twilight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating twilight-manual.tex ... OK
* checking twilight-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/1.9d/Rpacks/twilight.Rcheck/00check.log
for details

twilight.Rcheck/00install.out:

* Installing *source* package 'twilight' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c confidence.line.c -o confidence.line.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c correlation.c -o correlation.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c kstest.c -o kstest.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c sep.c -o sep.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c twosample.perm.c -o twosample.perm.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c twosample.single.c -o twosample.single.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o twilight.so confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o   -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c confidence.line.c -o confidence.line.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c correlation.c -o correlation.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c kstest.c -o kstest.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c sep.c -o sep.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c twosample.perm.c -o twosample.perm.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c twosample.single.c -o twosample.single.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o twilight.so confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o   -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'twilight'
     Formats: text html latex example 
  exfdr                             text    html    latex
  expval                            text    html    latex
  plot.twilight                     text    html    latex   example
  print.twilight                    text    html    latex   example
  twilight                          text    html    latex   example
  twilight.combi                    text    html    latex   example
  twilight.filtering                text    html    latex   example
  twilight.getlambda                text    html    latex
  twilight.getmatrix                text    html    latex
  twilight.permute.pair             text    html    latex
  twilight.permute.unpair           text    html    latex
  twilight.pval                     text    html    latex   example
  twilight.teststat                 text    html    latex   example
** building package indices ...
* DONE (twilight)