Package: tilingArray

Version: 1.11.12

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check tilingArray_1.11.12.tar.gz

RetCode: 0

Time: 107.5 seconds

Status: WARNINGS

CheckDir: tilingArray.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/1.9d/Rpacks/tilingArray.Rcheck'
* using R version 2.4.0 alpha (2006-09-07 r39185)
* checking for file 'tilingArray/DESCRIPTION' ... OK
* this is package 'tilingArray' version '1.11.12'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tilingArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error in paste(x[c("major", "minor")], collapse = ".") : 
	could not find function "getMethods"
Error: unable to load R code in package 'colorspace'
Error: unable to load R code in package 'tilingArray'
Execution halted

A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating tilingArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating tilingArray-manual.tex ... OK
* checking tilingArray-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/1.9d/Rpacks/tilingArray.Rcheck/00check.log
for details

* Installing *source* package 'tilingArray' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c findsegments.c -o findsegments.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c sampleStep.c -o sampleStep.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tilingArray.so findsegments.o sampleStep.o   -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c findsegments.c -o findsegments.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c sampleStep.c -o sampleStep.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tilingArray.so findsegments.o sampleStep.o   -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo

Attaching package: 'zoo'


	The following object(s) are masked from package:base :

	 rapply 

Loading required package: sandwich
Loading required package: colorspace
Creating a new generic function for 'plot' in 'colorspace'

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Loading required package: vsn
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: pixmap
** help
 >>> Building/Updating help pages for package 'tilingArray'
     Formats: text html latex example 
  PMindex                           text    html    latex   example
  breakpointsPretend                text    html    latex
  class-segmentation                text    html    latex   example
  comparisonPlot                    text    html    latex   example
  costMatrix                        text    html    latex   example
  findsegments                      text    html    latex   example
  normalizeByReference              text    html    latex   example
  otherStrand                       text    html    latex   example
  plotAlongChrom                    text    html    latex   example
  plotAlongChromLegend              text    html    latex   example
  plotFeatures                      text    html    latex   example
  plotSegmentationDots              text    html    latex   example
  plotSegmentationHeatmap           text    html    latex   example
  posMin                            text    html    latex   example
  qcPlots                           text    html    latex   example
  readCel2eSet                      text    html    latex   example
  sampleStep                        text    html    latex   example
  segChrom                          text    html    latex   example
  segment                           text    html    latex   example
  tilingArray-package               text    html    latex
** building package indices ...
* DONE (tilingArray)