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Package 147/205OSArchBUILDCHECKBUILD BIN

plier

1.3.2

Crispin Miller
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows XP i686 OK  OK skipped
Mac OS X (10.4.6) i686 OK [ ERROR ]
Package: plier
Version: 1.3.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check plier_1.3.2.tar.gz
RetCode: 1
Time: 13.6 seconds
Status: ERROR
CheckDir: plier.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/1.9d/Rpacks/plier.Rcheck'
* using R version 2.4.0 alpha (2006-09-07 r39185)
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.3.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... ERROR
Installation failed.
See '/Users/biocbuild/1.9d/Rpacks/plier.Rcheck/00install.out' for details.

plier.Rcheck/00install.out:

* Installing *source* package 'plier' ...
** libs
** arch - i386
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=pentium-m -mtune=prescott -c affyplier.cpp -o affyplier.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=pentium-m -mtune=prescott -c plier_impl.cpp -o plier_impl.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=pentium-m -mtune=prescott -c plieralg.cpp -o plieralg.o
plieralg.cpp:30:20: error: malloc.h: No such file or directory
make: *** [plieralg.o] Error 1
chmod: /Users/biocbuild/1.9d/Rpacks/plier.Rcheck/plier/libs/i386/*: No such file or directory
** arch - ppc
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c affyplier.cpp -o affyplier.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c plier_impl.cpp -o plier_impl.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c plieralg.cpp -o plieralg.o
plieralg.cpp:30:20: error: malloc.h: No such file or directory
make: *** [plieralg.o] Error 1
chmod: /Users/biocbuild/1.9d/Rpacks/plier.Rcheck/plier/libs/ppc/*: No such file or directory
ERROR: compilation failed for package 'plier'
** Removing '/Users/biocbuild/1.9d/Rpacks/plier.Rcheck/plier'