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| Package 132/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
oligo0.99.18Benilton Carvalho | Linux (SUSE 9.2) | x86_64 | OK | ERROR | |
| Linux (SUSE 9.2) | i686 | OK | ERROR | ||
| Solaris 2.9 | sparc | OK | [ ERROR ] | ||
| Linux (SUSE 10.0) | x86_64 | OK | ERROR | ||
| Windows Server 2003 | x86_64 | OK | ERROR | ERROR | |
| Windows XP | i686 | OK | ERROR | skipped | |
| Mac OS X (10.4.6) | i686 | OK | ERROR |
| Package: oligo |
| Version: 0.99.18 |
| Command: /loc/biocbuild/1.9d/R/bin/R CMD check oligo_0.99.18.tar.gz |
| RetCode: 1 |
| Time: 25.7 seconds |
| Status: ERROR |
| CheckDir: oligo.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.9d/Rpacks/oligo.Rcheck' * using R version 2.4.0 Under development (unstable) (2006-07-18 r38641) * checking for file 'oligo/DESCRIPTION' ... OK * this is package 'oligo' version '0.99.18' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'oligo' can be installed ... ERROR Installation failed. See '/loc/biocbuild/1.9d/Rpacks/oligo.Rcheck/00install.out' for details.
oligo.Rcheck/00install.out:
* Installing *source* package 'oligo' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c baseProfile.c -o baseProfile.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c basecontent.c -o basecontent.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c qnorm.c -o qnorm.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c rma2.c -o rma2.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c rma_background2.c -o rma_background2.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c rma_common.c -o rma_common.o
gcc -G -L/usr/local/lib -o oligo.so baseProfile.o basecontent.o qnorm.o rma2.o rma_background2.o rma_common.o -lz
** R
Error in tools:::.install_package_code_files(".", "/loc/biocbuild/1.9d/Rpacks/oligo.Rcheck/oligo") :
files in 'Collate' field missing from '/loc/biocbuild/1.9d/Rpacks/oligo.Rcheck/00_pkg_src/oligo/R':
methods-SnpCallSetPlus.R
Execution halted
ERROR: unable to collate files for package 'oligo'
** Removing '/loc/biocbuild/1.9d/Rpacks/oligo.Rcheck/oligo'