Back to the "Multiple platform build/check report"
| Package 22/187 | OS | Arch | BUILD | CHECK | BUILD BIN |
beadarray1.1.0Mark Dunning | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | [ WARNINGS ] | OK |
| Package: beadarray |
| Version: 1.1.0 |
| Command: D:\biocbld\1.9d\R\bin\R.exe CMD check beadarray_1.1.0.tar.gz |
| RetCode: 0 |
| Time: 192.4 seconds |
| Status: WARNINGS |
| CheckDir: beadarray.Rcheck |
| Warnings: 2 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/beadarray.Rcheck' * using R version 2.4.0 Under development (unstable) (2006-06-04 r38279) * checking for file 'beadarray/DESCRIPTION' ... OK * this is package 'beadarray' version '1.1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'beadarray' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: findAllOutliersSlow All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'findAllOutliers': findAllOutliers Code: function(BLData, array, log = FALSE, n = 3) Docs: function(BLData, array, log = FALSE, n = 3, ignoreList = NULL) * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * creating beadarray-Ex.R ... OK * checking examples ... OK * creating beadarray-manual.tex ... OK * checking beadarray-manual.tex ... OK WARNING: There were 2 warnings, see D:/biocbld/1.9d/Rpacks/beadarray.Rcheck/00check.log for details
beadarray.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/beadarray.Rcheck
---------- Making package beadarray ------------
adding build stamp to DESCRIPTION
making DLL ...
making createBeadSummaryData.d from createBeadSummaryData.c
making findProbeIndices.d from findProbeIndices.c
making readBeadImages.d from readBeadImages.c
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -c createBeadSummaryData.c -o createBeadSummaryData.o
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -c findProbeIndices.c -o findProbeIndices.o
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -c readBeadImages.c -o readBeadImages.o
readBeadImages.c: In function `readBeadImage':
readBeadImages.c:392: warning: 'BeginData' might be used uninitialized in this function
readBeadImages.c:392: warning: 'ImageWidth' might be used uninitialized in this function
readBeadImages.c:392: warning: 'ImageHeight' might be used uninitialized in this function
readBeadImages.c:392: warning: 'StripOffset' might be used uninitialized in this function
readBeadImages.c:393: warning: 'offset' might be used uninitialized in this function
readBeadImages.c:393: warning: 'records' might be used uninitialized in this function
windres --include-dir d:/biocbld/1.9d/R/include -i beadarray_res.rc -o beadarray_res.o
gcc -shared -s -o beadarray.dll beadarray.def createBeadSummaryData.o findProbeIndices.o readBeadImages.o beadarray_res.o -Ld:/biocbld/1.9d/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'beadarray'
Formats: text html latex example chm
BLData text html latex chm
BSData text html latex chm
BeadLevelList text html latex chm
BeadSummaryList text html latex chm
LargeDataObject text html latex example chm
backgroundCorrectBeads text html latex example chm
biotin_controls text html latex chm
cbind text html latex chm
checkRandomness text html latex example chm
createBeadSummaryData text html latex example chm
cy3_controls text html latex chm
dim text html latex chm
dimnames text html latex chm
displayTIFFImage text html latex example chm
findAllOutliers text html latex example chm
findBeadStatus text html latex example chm
findHighestChis text html latex example chm
findHighestSD text html latex example chm
findLowestCounts text html latex example chm
findMostOutliers text html latex example chm
getDimensions text html latex example chm
getMeanIntensities text html latex example chm
getProbeCoords text html latex example chm
getProbeIDs text html latex example chm
getProbeInfo text html latex chm
getProbeIntensities text html latex example chm
getUnregisteredBeads text html latex example chm
histBeadCounts text html latex example chm
housekeeping_controls text html latex chm
hs_controls text html latex chm
labelling_controls text html latex chm
ls_controls text html latex chm
matrix.mean text html latex chm
medianNormalise text html latex example chm
neg_controls text html latex chm
other_controls text html latex chm
pairwiseMA text html latex example chm
plotArray text html latex chm
plotBeadIntensities text html latex example chm
plotBeadLocations text html latex example chm
plotCluster text html latex chm
plotDistances text html latex example chm
plotMA.beads text html latex chm
plotMAXY text html latex example chm
plotOnSAM text html latex chm
plotProbeDistances text html latex example chm
plotProbeVariation text html latex chm
plotXY.beads text html latex chm
probeDiagnostics text html latex example chm
qsplineNormalise text html latex example chm
quantileNormalise text html latex example chm
readBeadImages text html latex example chm
readBeadSummaryData text html latex example chm
readBeadSummaryTargets text html latex example chm
readBeadTargets text html latex example chm
readNonXYData text html latex chm
readProbeInfo text html latex chm
removeArrays text html latex example chm
subsetting text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\beadarray.Rcheck\00_pkg_src\beadarray\chm\beadarray.chm
Compile time: 0 minutes, 0 seconds
60 Topics
172 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\beadarray.Rcheck\00_pkg_src\beadarray\chm\beadarray.chm, 71,179 bytes
Compression decreased file by 96,759 bytes.
preparing package beadarray for lazy loading
adding MD5 sums
* DONE (beadarray)