CHECK report for webbioc on gopher5

* checking for working latex ... OK * using log directory '/loc/biocbuild/1.9d/Rpacks/webbioc.Rcheck' * using R version 2.4.0 Under development (unstable) (2006-06-04 r38279) * checking for file 'webbioc/DESCRIPTION' ... OK * this is package 'webbioc' version '1.5.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'webbioc' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: last.warning All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating webbioc-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating webbioc-manual.tex ... OK * checking webbioc-manual.tex ... OK WARNING: There was 1 warning, see /loc/biocbuild/1.9d/Rpacks/webbioc.Rcheck/00check.log for details

* Installing *source* package 'webbioc' ... ** R ** inst ** save image Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: affyio Loading required package: multtest Loading required package: survival Loading required package: splines Loading required package: annaffy Loading required package: GO Loading required package: KEGG Loading required package: vsn Loading required package: gcrma Loading required package: matchprobes Loading required package: reposTools [1] FALSE Warning message: there is no package called 'reposTools' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE, ** help >>> Building/Updating help pages for package 'webbioc' Formats: text html latex example installReps text html latex mt.wrapper text html latex qplot text html latex qvalue text html latex qwrite text html latex ** building package indices ... * DONE (webbioc)

Package 183/187	OS	Arch	BUILD	CHECK	BUILD BIN
webbioc 1.5.0 Colin A. Smith	Linux (SUSE 9.2)	x86_64	OK	[ WARNINGS ]
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	ERROR	skipped
	Linux (SUSE 10.0)	x86_64	OK	WARNINGS
	Windows Server 2003	x86_64	OK	WARNINGS	OK

webbioc

1.5.0

Command output