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pairseqsim

1.7.0

Witold Wolski		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64[ OK ] OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: pairseqsim
Version: 1.7.0
Command: /home/biocbuild/1.9d/R/bin/R CMD build pairseqsim
RetCode: 0
Time: 20.4 seconds
Status: OK
PackageFile: pairseqsim_1.7.0.tar.gz

Command output

* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'pairseqsim' ...
** libs
gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c align.c -o align.o
gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c basic.c -o basic.o
gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c callalign.c -o callalign.o
gcc -shared -L/usr/local/lib64 -o pairseqsim.so align.o basic.o callalign.o   
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'pairseqsim'
     Formats: text html latex example 
  AAAlignment-class                 text    html    latex   example
  AAAlphabet-class                  text    html    latex   example
  AASequence-class                  text    html    latex   example
  AASequence                        text    html    latex   example
  AASequenceList-class              text    html    latex   example
  EPAM110                           text    html    latex   example
  Submatrix-class                   text    html    latex
  listdist-methods                  text    html    latex
  readFasta-methods                 text    html    latex   example
  salign-methods                    text    html    latex   example
  sequlist                          text    html    latex   example
  testalign-methods                 text    html    latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'pairseqsim_1.7.0.tar.gz'