Package: affypdnn

Version: 1.7.0

Command: /home/biocbuild/1.9d/R/bin/R CMD check affypdnn_1.7.0.tar.gz

RetCode: 0

Time: 256.5 seconds

Status: WARNINGS

CheckDir: affypdnn.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/1.9d/Rpacks/affypdnn.Rcheck'
* using R version 2.4.0 Under development (unstable) (2006-06-04 r38279)
* checking for file 'affypdnn/DESCRIPTION' ... OK
* this is package 'affypdnn' version '1.7.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affypdnn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'transform.ProbeSet'
  _data
Documented arguments not in \usage in documentation object 'transform.ProbeSet':
  `_data`

Functions with \usage entries need to have the appropriate \alias entries,
and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating affypdnn-Ex.R ... OK
* checking examples ... OK
* creating affypdnn-manual.tex ... OK
* checking affypdnn-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/1.9d/Rpacks/affypdnn.Rcheck/00check.log
for details

* Installing *source* package 'affypdnn' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: affydata
Loading required package: hgu95av2probe
Loading required package: matchprobes
** help
 >>> Building/Updating help pages for package 'affypdnn'
     Formats: text html latex example 
  chiptype.pdnn.params              text    html    latex   example
  expressopdnn                      text    html    latex   example
  find.params.pdnn                  text    html    latex   example
  generateExprVal.method.pdnn       text    html    latex   example
  matplotProbesPDNN                 text    html    latex   example
  pdnn.params.chiptype              text    html    latex   example
  transform.ProbeSet                text    html    latex   example
** building package indices ...
* DONE (affypdnn)