Back to the "Multiple platform build/check report"
| Package 149/187 | OS | Arch | BUILD | CHECK | BUILD BIN |
rhdf51.7.0Biocore Team | Linux (SUSE 9.2) | x86_64 | ERROR | skipped | |
| Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
| Solaris 2.9 | sparc | OK | [ OK ] | ||
| Linux (SUSE 10.0) | x86_64 | ERROR | skipped | ||
| Windows Server 2003 | x86_64 | ERROR | skipped | skipped |
| Package: rhdf5 |
| Version: 1.7.0 |
| Command: /loc/biocbuild/1.9d/R/bin/R CMD check rhdf5_1.7.0.tar.gz |
| RetCode: 0 |
| Time: 60.5 seconds |
| Status: OK |
| CheckDir: rhdf5.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.9d/Rpacks/rhdf5.Rcheck' * using R version 2.4.0 Under development (unstable) (2006-06-04 r38279) * checking for file 'rhdf5/DESCRIPTION' ... OK * this is package 'rhdf5' version '1.7.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'rhdf5' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating rhdf5-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating rhdf5-manual.tex ... OK * checking rhdf5-manual.tex ... OK
rhdf5.Rcheck/00install.out:
* Installing *source* package 'rhdf5' ...
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... no
checking for unistd.h... yes
checking for hdf5... yes
checking for H5Fopen in -lhdf5... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking hdf5 in /usr/local... ok
checking for hdf5 version >= 1.4... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf5.c -o hdf5.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_attribs.c -o hdf_attribs.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_convert.c -o hdf_convert.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_dataset.c -o hdf_dataset.o
hdf_dataset.c: In function `HDF_VectorSubset':
hdf_dataset.c:445: warning: passing arg 4 of `H5Sselect_elements' from incompatible pointer type
hdf_dataset.c: In function `HDF_dataset_select_points':
hdf_dataset.c:483: warning: passing arg 4 of `H5Sselect_elements' from incompatible pointer type
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_dataspace.c -o hdf_dataspace.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_datatype.c -o hdf_datatype.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_files.c -o hdf_files.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_group.c -o hdf_group.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_group_apply.c -o hdf_group_apply.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_initializer.c -o hdf_initializer.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_io.c -o hdf_io.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_plist.c -o hdf_plist.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_register.c -o hdf_register.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_subassign.c -o hdf_subassign.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -L/usr/local/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c hdf_util.c -o hdf_util.o
gcc -G -L/usr/local/lib -o rhdf5.so hdf5.o hdf_attribs.o hdf_convert.o hdf_dataset.o hdf_dataspace.o hdf_datatype.o hdf_files.o hdf_group.o hdf_group_apply.o hdf_initializer.o hdf_io.o hdf_plist.o hdf_register.o hdf_subassign.o hdf_util.o -L/usr/local/lib -lhdf5
** R
** inst
** help
>>> Building/Updating help pages for package 'rhdf5'
Formats: text html latex example
Extract.hdf5 text html latex example
as.double.hdf5.dataset text html latex example
as.hdf5.dataset text html latex example
as.matrix.hdf5.dataset text html latex example
dim.hdf5 text html latex example
hdf5.apply text html latex example
hdf5.attributes text html latex example
hdf5.dataset text html latex example
hdf5.datatypes text html latex
hdf5.file text html latex example
hdf5.group text html latex example
hdf5.info text html latex example
hdf5.overview text html latex example
hdf5.plist.create text html latex example
hdf5.readcel text html latex example
is.finite text html latex example
is.matrix text html latex example
min.hdf5.dataset text html latex example
names.hdf5.file text html latex example
print.hdf5.dataspace text html latex example
space.hdf5.dataset text html latex example
swapmemory text html latex example
** building package indices ...
* DONE (rhdf5)