Package: makecdfenv

Version: 1.11.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD build makecdfenv

RetCode: 1

Time: 11.2 seconds

Status: ERROR

PackageFile: None

* checking for file 'makecdfenv/DESCRIPTION' ... OK
* preparing 'makecdfenv':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1  -I/usr/local/include   -fPIC  -g -O2 -std=gnu99 -Wall -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function `fillCharFromLine':
read_cdffile.c:396: warning: implicit declaration of function `index'
read_cdffile.c: In function `readQC':
read_cdffile.c:565: warning: unused variable `param_unit'
gcc -G -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz   
** R
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
Error in dyn.load(x, as.logical(local), as.logical(now)) : 
	unable to load shared library '/loc/biocbuild/1.9d/R/library/affy/libs/affy.so':
  ld.so.1: /loc/biocbuild/1.9d/R/bin/exec/R: fatal: relocation error: file /loc/biocbuild/1.9d/R/library/affy/libs/affy.so: symbol nearbyint: referenced symbol not found
Error: package 'affy' could not be loaded
Execution halted
ERROR: execution of package source for 'makecdfenv' failed
** Removing '/tmp/Rinst1258447698/makecdfenv'
 ERROR
Installation failed.
Removing '/tmp/Rinst1258447698'