Package: GeneR

Version: 2.3.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD build GeneR

RetCode: 1

Time: 22.7 seconds

Status: ERROR

PackageFile: None

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* checking whether 'INDEX' is up-to-date ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GeneR' ...
** libs
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c GeneR_glob.cc -o GeneR_glob.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c GeneR_seq.cc -o GeneR_seq.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c complementaire.cc -o complementaire.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c compoSeq.cc -o compoSeq.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c dnaRna.cc -o dnaRna.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c libIndex.cc -o libIndex.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c libStrings.cc -o libStrings.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c makeIndex.cc -o makeIndex.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c masked.cc -o masked.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c misc.cc -o misc.o
misc.cc: In function `SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)':
misc.cc:30: warning: 'ans' might be used uninitialized in this function
misc.cc:31: warning: 'multiple' might be used uninitialized in this function
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c readEmblDescript.cc -o readEmblDescript.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c readIndex.cc -o readIndex.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c readLocation.cc -o readLocation.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c readSeqEmbl.cc -o readSeqEmbl.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c readSeqFasta.cc -o readSeqFasta.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c readSeqGbk.cc -o readSeqGbk.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -Wall -c seqManip.cc -o seqManip.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -fPIC  -g -O2 -std=gnu99 -Wall -c strcasestr.c -o strcasestr.o
In file included from strcasestr.c:29:
strcasestr.h:29: error: parse error before string constant
make: *** [strcasestr.o] Error 1
ERROR: compilation failed for package 'GeneR'
** Removing '/tmp/Rinst2394287233/GeneR'
 ERROR
Installation failed.
Removing '/tmp/Rinst2394287233'