Package: simpleaffy

Version: 2.6.0

Command: /loc/biocbuild/1.8d/R/bin/R CMD build simpleaffy

RetCode: 0

Time: 27.8 seconds

Status: OK

PackageFile: simpleaffy_2.6.0.tar.gz

* checking for file 'simpleaffy/DESCRIPTION' ... OK
* preparing 'simpleaffy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'simpleaffy' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c simpleaffy.c -o simpleaffy.o
gcc -shared -L/usr/local/lib -o simpleaffy.so simpleaffy.o   
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Creating a new generic function for 'plot' in 'simpleaffy'
** help
 >>> Building/Updating help pages for package 'simpleaffy'
     Formats: text html latex example 
  PairComp-class                    text    html    latex
  QCStats-accessor                  text    html    latex
  QCStats-class                     text    html    latex
  all.present                       text    html    latex   example
  all.present.in.group              text    html    latex   example
  alpha                             text    html    latex
  bg.correct.sa                     text    html    latex   example
  call.exprs                        text    html    latex   example
  detection.p.val                   text    html    latex   example
  get.annotation                    text    html    latex   example
  get.array.indices                 text    html    latex   example
  get.array.subset                  text    html    latex   example
  get.array.subset.affy             text    html    latex   example
  get.fold.change.and.t.test        text    html    latex   example
  getActin3                         text    html    latex   example
  getActin5                         text    html    latex   example
  getActinM                         text    html    latex   example
  getAllQCProbes                    text    html    latex   example
  getAllSpikeProbes                 text    html    latex   example
  getAlpha1                         text    html    latex   example
  getAlpha2                         text    html    latex   example
  getBioB                           text    html    latex   example
  getBioC                           text    html    latex   example
  getBioD                           text    html    latex   example
  getCreX                           text    html    latex   example
  getGapdh3                         text    html    latex   example
  getGapdh5                         text    html    latex   example
  getGapdhM                         text    html    latex   example
  getQCParams-methods               text    html    latex
  getTao                            text    html    latex   example
  haveQCParams                      text    html    latex   example
  hmap.colors                       text    html    latex   example
  hmap.eset                         text    html    latex   example
  hmap.pc                           text    html    latex   example
  journalpng                        text    html    latex   example
  justMAS                           text    html    latex   example
  pairwise.comparison               text    html    latex   example
  pairwise.filter                   text    html    latex   example
  plot.pairwise.comparison          text    html    latex   example
  plot.qc.stats                     text    html    latex   example
  qc                                text    html    latex   example
  qc.affy                           text    html    latex   example
  qc.probes                         text    html    latex
  read.affy                         text    html    latex   example
  read.affy.mixed                   text    html    latex   example
  spikes                            text    html    latex
  standard.pearson                  text    html    latex   example
  trad.scatter.plot                 text    html    latex   example
** building package indices ...
* DONE (simpleaffy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'simpleaffy_2.6.0.tar.gz'