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rama

1.4.0

Raphael Gottardo		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK [ OK ]
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: rama
Version: 1.4.0
Command: /loc/biocbuild/1.8d/R/bin/R CMD check rama_1.4.0.tar.gz
RetCode: 0
Time: 63.8 seconds
Status: OK
CheckDir: rama.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.8d/Rpacks/rama.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'rama/DESCRIPTION' ... OK
* this is package 'rama' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rama' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating rama-Ex.R ... OK
* checking examples ... OK
* creating rama-manual.tex ... OK
* checking rama-manual.tex ... OK

rama.Rcheck/00install.out:

* Installing *source* package 'rama' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function `mcmc_shift':
estimation_slice.c:113: warning: unused variable `lambda_eps1_new'
estimation_slice.c:113: warning: unused variable `lambda_eps2_new'
estimation_slice.c:114: warning: unused variable `l_epsilon'
estimation_slice.c:114: warning: unused variable `l_epsilon_new'
estimation_slice.c:115: warning: unused variable `dens_epsilon'
estimation_slice.c:115: warning: unused variable `dens_epsilon_new'
estimation_slice.c:116: warning: unused variable `SSR1'
estimation_slice.c:116: warning: unused variable `SSR2'
estimation_slice.c:116: warning: unused variable `SS12'
estimation_slice.c:117: warning: unused variable `pi'
estimation_slice.c:121: warning: unused variable `SSeps_sd'
estimation_slice.c:122: warning: unused variable `SSeps_sd_new'
estimation_slice.c: In function `slice_sampling_lambda_eps':
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function `mcmc':
ex_estimation_slice.c:112: warning: unused variable `pi'
ex_estimation_slice.c:119: warning: unused variable `dens_t'
ex_estimation_slice.c:119: warning: unused variable `dens_t_new'
ex_estimation_slice.c:137: warning: unused variable `sum_res1'
ex_estimation_slice.c:138: warning: unused variable `sum_res2'
ex_estimation_slice.c:143: warning: unused variable `old_b'
ex_estimation_slice.c:144: warning: unused variable `old_a'
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c mean.sd.c -o mean.sd.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c reorder.c -o reorder.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c util.c -o util.o
util.c: In function `qr_solve':
util.c:570: warning: implicit declaration of function `dqrdc2_'
util.c:585: warning: implicit declaration of function `dqrcf_'
util.c:549: warning: unused variable `vmax'
util.c: In function `inverse':
util.c:608: warning: unused variable `j'
util.c: In function `product_mat_vec':
util.c:655: warning: unused variable `k'
util.c: In function `slice_sampling_a':
util.c:752: warning: suggest parentheses around comparison in operand of |
util.c:752: warning: suggest parentheses around comparison in operand of &
util.c:759: warning: suggest parentheses around comparison in operand of &
util.c:766: warning: suggest parentheses around comparison in operand of &
util.c:736: warning: unused variable `v'
util.c: In function `slice_sampling_b':
util.c:826: warning: suggest parentheses around comparison in operand of |
util.c:826: warning: suggest parentheses around comparison in operand of &
util.c:833: warning: suggest parentheses around comparison in operand of &
util.c:840: warning: suggest parentheses around comparison in operand of &
util.c:809: warning: unused variable `v'
util.c: In function `slice_sampling_b2':
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:898: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_a2':
util.c:945: warning: suggest parentheses around comparison in operand of &
util.c:953: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_rho':
util.c:999: warning: suggest parentheses around comparison in operand of |
util.c:999: warning: suggest parentheses around comparison in operand of &
util.c:1006: warning: suggest parentheses around comparison in operand of &
util.c:1013: warning: suggest parentheses around comparison in operand of &
util.c:983: warning: unused variable `v'
util.c: In function `slice_sampling_rho2':
util.c:1058: warning: suggest parentheses around comparison in operand of &
util.c:1067: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_shift':
util.c:1142: warning: suggest parentheses around comparison in operand of |
util.c:1142: warning: suggest parentheses around comparison in operand of &
util.c:1149: warning: suggest parentheses around comparison in operand of &
util.c:1156: warning: suggest parentheses around comparison in operand of &
util.c:1123: warning: unused variable `v'
util.c: In function `slice_sampling_shift2':
util.c:1223: warning: suggest parentheses around comparison in operand of &
util.c:1231: warning: suggest parentheses around comparison in operand of &
util.c:1205: warning: unused variable `v'
util.c: In function `slice_sampling_p':
util.c:1371: warning: suggest parentheses around comparison in operand of &
util.c:1379: warning: suggest parentheses around comparison in operand of &
gcc -shared -L/usr/local/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o   
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'rama'
     Formats: text html latex example 
  arrange.row                       text    html    latex   example
  est.shift                         text    html    latex   example
  fit.model                         text    html    latex   example
  hiv                               text    html    latex
  is.row.na                         text    html    latex   example
  ls.effect                         text    html    latex   example
  mat.mean                          text    html    latex   example
  ratio.plot                        text    html    latex   example
  weight.plot                       text    html    latex   example
** building package indices ...
* DONE (rama)