Package: EBImage

Version: 1.2.2

Command: /loc/biocbuild/1.8d/R/bin/R CMD check EBImage_1.2.2.tar.gz

RetCode: 0

Time: 83.2 seconds

Status: WARNINGS

CheckDir: EBImage.Rcheck

Warnings: 5

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.8d/Rpacks/EBImage.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '1.2.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... WARNING

See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING

In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING

See section 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking Rd files ... OK
* checking for missing documentation entries ... WARNING

All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING



* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex ... OK

WARNING: There were 5 warnings, see
  /extra/loc/biocbuild/1.8d/Rpacks/EBImage.Rcheck/00check.log
for details

* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.0.7 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/include
R found in: /loc/biocbuild/1.8d/R
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c algorithms2D.cpp -o algorithms2D.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c common.cpp -o common.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c display.cpp -o display.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c filters2D.cpp -o filters2D.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c filters2D_magick.cpp -o filters2D_magick.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c io.cpp -o io.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread -fpic  -g -O2 -Wall -c libmain.cpp -o libmain.o
g++ -shared -L/usr/local/lib -o EBImage.so algorithms2D.o common.o conversions.o display.o filters2D.o filters2D_magick.o io.o libmain.o -L/usr/lib -L/usr/lib -L/usr/X11R6/lib -lfreetype -L/usr/lib -lMagick++ -lWand -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread  
** R
** inst
** save image
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  algorithms2D.objectCount          text    html    latex   example
  class.Image2D                     text    html    latex   example
  class.Image3D                     text    html    latex   example
  filters2D.distMap                 text    html    latex   example
  filters2D.magick-colors           text    html    latex   example
  filters2D.magick-enhance          text    html    latex   example
  filters2D.magick-segment          text    html    latex   example
  filters2D.magick-transform        text    html    latex   example
  filters2D.magick                  text    html    latex   example
  filters2D.thresh                  text    html    latex   example
  image.io                          text    html    latex   example
  internals                         text    html    latex
** building package indices ...
* DONE (EBImage)