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Package 37/172OSArchBUILDCHECKBUILD BIN

copa

1.0.1

James W. MacDonald		Linux (SUSE 9.2) x86_64 OK [ OK ]
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: copa
Version: 1.0.1
Command: /loc/biocbuild/1.8d/R/bin/R CMD check copa_1.0.1.tar.gz
RetCode: 0
Time: 265.7 seconds
Status: OK
CheckDir: copa.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/Rpacks/copa.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'copa/DESCRIPTION' ... OK
* this is package 'copa' version '1.0.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'copa' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating copa-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating copa-manual.tex ... OK
* checking copa-manual.tex ... OK

copa.Rcheck/00install.out:

* Installing *source* package 'copa' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c copa.c -o copa.o
gcc -shared -L/usr/local/lib64 -o copa.so copa.o   
** R
** inst
** help
 >>> Building/Updating help pages for package 'copa'
     Formats: text html latex example 
  copa                              text    html    latex   example
  copa.package                      text    html    latex
  copaFilter                        text    html    latex
  copaPerm                          text    html    latex
  copaTable                         text    html    latex   example
  getans                            text    html    latex
  pSum                              text    html    latex
  perm.mat                          text    html    latex
  plotCopa                          text    html    latex   example
  scatterPlotCopa                   text    html    latex   example
** building package indices ...
* DONE (copa)