qpgraph
This is the development version of qpgraph; for the stable release version, see qpgraph.
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data
Bioconductor version: Development (3.23)
Estimate gene and eQTL networks from high-throughput expression and genotyping assays.
Author: Robert Castelo [aut, cre], Alberto Roverato [aut]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R, enter
citation("qpgraph")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qpgraph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneExpression, GeneRegulation, GeneticVariability, Genetics, GraphAndNetwork, Microarray, NetworkInference, Pathways, SNP, Software, Transcription |
| Version | 2.45.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (16.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5) |
| Imports | methods, parallel, Matrix (>= 1.5-0), grid, annotate, graph(>= 1.45.1), Biobase, S4Vectors, BiocParallel, AnnotationDbi, IRanges, Seqinfo, GenomicRanges, GenomicFeatures, mvtnorm, qtl, Rgraphviz |
| System Requirements | |
| URL | https://github.com/rcastelo/qpgraph |
| Bug Reports | https://github.com/rcastelo/qpgraph/issues |
See More
| Suggests | RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db, rlecuyer, snow, Category, GOstats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/qpgraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qpgraph |
| Package Short Url | https://bioconductor.org/packages/qpgraph/ |
| Package Downloads Report | Download Stats |