Mulder2012

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Mulder2012.

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens


Bioconductor version: 3.7

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

Citation (from within R, enter citation("Mulder2012")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mulder2012")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mulder2012")
Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, StemCell
Version 0.20.0
License Artistic-2.0
Depends R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Mulder2012_0.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/Mulder2012
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Mulder2012
Package Short Url https://bioconductor.org/packages/Mulder2012/
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