RedeR

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RedeR.

Interactive visualization and manipulation of nested networks


Bioconductor version: 3.7

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")
RedeR: hierarchical network representation HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.28.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL (>= 2)
Depends R (>= 3.3.3), methods
Imports igraph
System Requirements Java Runtime Environment (>= 6)
URL http://genomebiology.com/2012/13/4/R29
See More
Suggests pvclust, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me Fletcher2013b
Imports Me Mulder2012, PANR, RTN, transcriptogramer
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_1.28.0.tar.gz
Windows Binary RedeR_1.28.0.zip
Mac OS X 10.11 (El Capitan) RedeR_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedeR
Package Short Url https://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive