beachmat

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type


Bioconductor version: 3.7

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <alun at wehi.edu.au>

Citation (from within R, enter citation("beachmat")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beachmat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat")
Linking to beachmat with C++ code from another package HTML R Script
Using beachmat to read data from R matrices in C++ HTML R Script
Using beachmat to write data into R matrix objects HTML R Script
Using beachmat's helper functions in R HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.2.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.7.3), DelayedArray(>= 0.5.30), Rcpp (>= 0.12.14)
System Requirements C++11
URL
See More
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
Linking To Rcpp, Rhdf5lib
Enhances
Depends On Me
Imports Me
Suggests Me DropletUtils, scater, scran
Links To Me DropletUtils, scater, scran
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat_1.2.1.tar.gz
Windows Binary beachmat_1.2.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) beachmat_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/beachmat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beachmat
Package Short Url https://bioconductor.org/packages/beachmat/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive