HDF5Array

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see HDF5Array.

HDF5 back end for DelayedArray objects


Bioconductor version: 3.7

An array-like container for convenient access and manipulation of HDF5 datasets. Supports delayed operations and block processing.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("HDF5Array")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HDF5Array")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Annotation, Coverage, DataRepresentation, GenomeAnnotation, Infrastructure, Sequencing, Software
Version 1.8.1
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License Artistic-2.0
Depends R (>= 3.4), methods, DelayedArray(>= 0.5.32), rhdf5
Imports utils, tools, BiocGenerics(>= 0.25.1), S4Vectors, IRanges
System Requirements
URL
See More
Suggests h5vcData, SummarizedExperiment(>= 1.9.6), GenomicRanges, BiocStyle
Linking To
Enhances
Depends On Me BiocSklearn, TENxBrainData
Imports Me beachmat, bsseq, clusterExperiment, minfi, scmeth
Suggests Me DelayedArray, DelayedMatrixStats, DropletUtils, MultiAssayExperiment, scran, SummarizedExperiment
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HDF5Array_1.8.1.tar.gz
Windows Binary HDF5Array_1.8.1.zip
Mac OS X 10.11 (El Capitan) HDF5Array_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/HDF5Array
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HDF5Array
Bioc Package Browser https://code.bioconductor.org/browse/HDF5Array/
Package Short Url https://bioconductor.org/packages/HDF5Array/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive