RchyOptimyx

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RchyOptimyx.

Optimyzed Cellular Hierarchies for Flow Cytometry


Bioconductor version: 3.7

Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

Author: Adrin Jalali, Nima Aghaeepour

Maintainer: Adrin Jalali <adrin.jalali at gmail.com>, Nima Aghaeepour <naghaeep at gmail.com>

Citation (from within R, enter citation("RchyOptimyx")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RchyOptimyx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RchyOptimyx")
flowType package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews FlowCytometry, Software
Version 2.20.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License Artistic-2.0
Depends R (>= 2.10)
Imports Rgraphviz, sfsmisc, graphics, methods, graph, grDevices, flowType(>= 2.0.0)
System Requirements
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Suggests flowCore
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Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RchyOptimyx_2.20.0.tar.gz
Windows Binary RchyOptimyx_2.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) RchyOptimyx_2.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RchyOptimyx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RchyOptimyx
Package Short Url https://bioconductor.org/packages/RchyOptimyx/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive