EnrichedHeatmap

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see EnrichedHeatmap.

Making Enriched Heatmaps


Bioconductor version: 3.7

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("EnrichedHeatmap")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnrichedHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnrichedHeatmap")
Compare row ordering methods HTML R Script
Make Enriched Heatmaps HTML R Script
Visualize Categorical Signals HTML R Script
Visualize Comprehensive Associations in Roadmap dataset HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), methods, grid, ComplexHeatmap(>= 1.15.2), GenomicRanges
Imports matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.1), IRanges
System Requirements
URL https://github.com/jokergoo/EnrichedHeatmap
See More
Suggests testthat (>= 0.3), knitr, markdown, genefilter, RColorBrewer
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnrichedHeatmap_1.10.0.tar.gz
Windows Binary EnrichedHeatmap_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) EnrichedHeatmap_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EnrichedHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EnrichedHeatmap
Package Short Url https://bioconductor.org/packages/EnrichedHeatmap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive