ComplexHeatmap

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Making Complex Heatmaps


Bioconductor version: 3.7

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")
1. Introduction to ComplexHeatmap package HTML R Script
2. Making a single heatmap HTML R Script
3. Making a list of Heatmaps HTML R Script
4. Heatmap Annotations HTML R Script
5. Heatmap and Annotation Legends HTML R Script
6. Heatmap Decoration HTML R Script
7. Interactive with Heatmaps HTML R Script
8. OncoPrint HTML R Script
9. More Examples HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Sequencing, Software, Visualization
Version 1.18.1
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.0.10)
System Requirements
URL https://github.com/jokergoo/ComplexHeatmap
See More
Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)
Linking To
Enhances
Depends On Me EnrichedHeatmap, recoup
Imports Me BiocOncoTK, CATALYST, cytofWorkflow, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, maftools, MWASTools, PathoStat, singleCellTK, TCGAbiolinks, TCGAWorkflow, YAPSA
Suggests Me gtrellis, HilbertCurve
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_1.18.1.tar.gz
Windows Binary ComplexHeatmap_1.18.1.zip
Mac OS X 10.11 (El Capitan) ComplexHeatmap_1.18.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComplexHeatmap
Bioc Package Browser https://code.bioconductor.org/browse/ComplexHeatmap/
Package Short Url https://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive