All Classes and Interfaces
Classes
Class
Description
Objects of this class represent a sequence alignment
Objects of this class represent an angle
Collection of methods for analysing angles
Parent class of JGromacs applications.
Objects of this class represent a single atom
Objects of this class represent an atom type
Collection of methods for analysing distances
Collection of methods for analysing molecular motions
Objects of this class represent a single frame index set
Objects of this class represent a Gaussian Network Model (GNM) of a protein
Objects of this class represent a single index set
Objects of this class represent a list of index sets
This class contains static methods for IO of data objects
This class contains static methods for IO of ArrayList and Matrix objects
Objects of this class represent a single 3D point
Objects of this class represent a list of 3D points
Objects of this class represent a single residue
Objects of this class represent a residue type
Objects of this class represent a single amino acid sequence
Objects of this class represent a single sequence position
Collection of methods for measuring structural similarity
Objects of this class represent a single structure
Collection of methods for superposing structures
Template JGromacs application
Objects of this class represent a single trajectory