See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2025-01-21 06:47:13 -0500 (Tue, 21 Jan 2025).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (60342)
2	BiocGenerics (57644)
3	GenomeInfoDb (56580)
4	S4Vectors (55986)
5	zlibbioc (54633)
6	IRanges (53957)
7	XVector (49725)
8	Biobase (49092)
9	Biostrings (48706)
10	GenomicRanges (44959)
11	DelayedArray (42082)
12	BiocParallel (41672)
13	MatrixGenerics (40104)
14	S4Arrays (39954)
15	SummarizedExperiment (39715)
16	SparseArray (39683)
17	AnnotationDbi (36217)
18	KEGGREST (36209)
19	limma (33672)
20	BiocFileCache (26116)
21	Rhtslib (25058)
22	UCSC.utils (24528)
23	edgeR (24448)
24	GenomicAlignments (24192)
25	Rsamtools (23947)

26	Rhdf5lib (23802)
27	biomaRt (22933)
28	DESeq2 (22161)
29	ggtree (21859)
30	rtracklayer (20949)
31	treeio (20927)
32	rhdf5 (20327)
33	BiocIO (19978)
34	clusterProfiler (19789)
35	rhdf5filters (19646)
36	GenomicFeatures (19554)
37	DOSE (19104)
38	graph (18927)
39	enrichplot (18840)
40	GOSemSim (18817)
41	qvalue (18289)
42	fgsea (18206)
43	annotate (17501)
44	BSgenome (16419)
45	beachmat (16163)
46	SingleCellExperiment (15905)
47	DelayedMatrixStats (15861)
48	sparseMatrixStats (15660)
49	ComplexHeatmap (15643)
50	HDF5Array (14787)

51	preprocessCore (14215)
52	BiocSingular (12736)
53	ScaledMatrix (12526)
54	multtest (12330)
55	genefilter (12127)
56	VariantAnnotation (11943)
57	ProtGenerics (11719)
58	AnnotationHub (11463)
59	BiocNeighbors (11164)
60	AnnotationFilter (11085)
61	impute (10637)
62	ensembldb (9955)
63	GEOquery (9697)
64	Rgraphviz (9556)
65	scuttle (9381)
66	RBGL (9339)
67	GSEABase (9034)
68	affyio (8095)
69	affy (7994)
70	ExperimentHub (7770)
71	sva (7491)
72	scater (7171)
73	GSVA (7035)
74	BiocBaseUtils (6775)
75	interactiveDisplayBase (6481)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (140)
	a4Base (167)
	a4Classif (133)
	a4Core (179)
	a4Preproc (179)
	a4Reporting (134)
	aads.rnai (1)
	ABAData (1)
	ABAEnrichment (30)
	abaenrichment (0)
	ABarray (130)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (33)
	abseqR (83)
	ABSOLUTE (0)
	ABSSeq (154)
	acde (102)
	ACE (116)
	ace.fma (1)
	acepack (2)
	aCGH (231)
	ACME (135)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (0)
	ADaCGH2 (120)
	ADAM (174)
	ADAMgui (114)
	ADAPT (9)
	adaptest (12)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (1)
	adductomicsR (82)
	ade4 (3)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (1)
	ADGofTest (0)
	ADImpute (93)
	aditools (1)
	adjustedCurves (1)
	admiral (2)
	admiral.test (0)
	admiraldev (2)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (10)
	admixtools (0)
	ADMM (0)
	adSplit (117)
	adverSCarial (59)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (81)
	affxparser (1592)
	affy (7994)
	Affy (1)
	affycomp (134)
	AffyCompatible (59)
	affyContam (137)
	affycoretools (394)
	affydata (4)
	AffyExpress (48)
	affyILM (124)
	affyio (8095)
	affylmGUI (145)
	affyPara (49)
	affypdnn (45)
	affyPLM (1006)
	affyplm (0)
	affyQCReport (53)
	AffyRNADegradation (105)
	AffyTiling (33)
	AGDEX (108)
	aggregateBioVar (90)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (17)
	agilp (123)
	AgiMicroRna (175)
	agricolae (10)
	agridat (1)
	AHMassBank (71)
	AICcmodavg (1)
	aigoraFitMini (1)
	AIMS (384)
	AIPW (0)
	airpart (87)
	airr (1)
	airway (1)
	akima (1)
	alabama (0)
	alabaster (70)
	alabaster.base (2427)
	alabaster.bumpy (81)
	alabaster.files (60)
	alabaster.mae (86)
	alabaster.matrix (2399)
	alabaster.ranges (2292)
	alabaster.sce (797)
	alabaster.schemas (2129)
	alabaster.se (2222)
	alabaster.spatial (85)
	alabaster.string (97)
	alabaster.vcf (89)
	alakazam (1)
	ald (0)
	ALDEx2 (1182)
	aldvmm (1)
	alembic (0)
	alevinQC (107)
	AlgDesign (3)
	alkahest.generic (0)
	ALL (10)
	AllelicImbalance (139)

	alluvial (0)
	almanac (0)
	AlphaBeta (74)
	alphahull (0)
	AlphaMissenseR (57)
	alphashape3d (0)
	AlphaSimR (0)
	alphavantager (1)
	alpine (39)
	ALPS (10)
	AlpsNMR (89)
	alr3 (1)
	alr4 (0)
	alsace (33)
	altair (1)
	altcdfenvs (142)
	amap (1)
	AMARETTO (202)
	ambient (0)
	Amelia (3)
	AmesHousing (0)
	amgen.okta.client (1)
	amgsafetyvis (0)
	amlogger (0)
	AMOUNTAIN (93)
	amplican (110)
	ampliQueso (30)
	AnalysisPageServer (24)
	anamiR (12)
	Anaquin (83)
	ANCOMBC (1197)
	ANCOMBCs (1)
	Andromeda (0)
	AneuFinder (116)
	aneufinder (1)
	AneuFinderData (0)
	aneufinderdata (1)
	ANF (84)
	angrycell (1)
	animalcules (234)
	animation (1)
	annaffy (284)
	AnnBuilder (7)
	annbuilder (0)
	anndata (1)
	annmap (123)
	AnnoProbe (1)
	annotate (17501)
	annotation (0)
	AnnotationDbi (36217)
	annotationdbi (1)
	annotationDBI (1)
	AnnotationFilter (11085)
	AnnotationForge (2164)
	AnnotationFuncs (41)
	AnnotationHub (11463)
	annotationhub (1)
	AnnotationHubData (365)
	annotationTools (134)
	annotatr (471)
	anota (118)
	anota2seq (100)
	anRichment (0)
	antaresProcessing (1)
	anticlust (1)
	antiProfiles (99)
	AnVIL (534)
	AnVILAz (24)
	AnVILBase (59)
	AnVILBilling (67)
	AnVILGCP (24)
	AnVILPublish (78)
	AnVILWorkflow (63)
	anytime (8)
	aod (2)
	APAlyzer (98)
	apcluster (1)
	apComplex (115)
	APCtools (1)
	ape (52)
	apeglm (3651)
	apexcharter (0)
	APL (194)
	apLCMS (1)
	aplot (46)
	appgen (1)
	applera (2)
	appreci8R (86)
	aqp (1)
	archive (2)
	ArchR (0)
	argparse (12)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (2)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (1)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (1)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (1)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (3)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (1)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (1)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (3)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)

	argusDS.signal.backtesting (1)
	argusDS.signal.dataprep (2)
	argusDS.signal.generation (1)
	argusDS.smoothers (1)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (3)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (8)
	aroma.apd (9)
	aroma.core (8)
	aroma.light (1970)
	ArrayExpress (426)
	arrayexpress (0)
	ArrayExpressHTS (43)
	arrayhelpers (0)
	arrayMagic (7)
	arrayMvout (106)
	arrayop (1)
	arrayQCplot (2)
	arrayQuality (173)
	arrayQualityMetrics (461)
	arrayqualitymetrics (0)
	ArrayTools (47)
	ArrayTV (37)
	ARRmData (1)
	ARRmNormalization (101)
	arrow (21)
	arsenal (1)
	artMS (102)
	arules (1)
	ArvadosR (1)
	ASAFE (74)
	ASCAT (0)
	ascii (1)
	asciicast (1)
	ASEB (95)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (96)
	ash (5)
	ashr (1)
	asht (0)
	ASICS (115)
	AsioHeaders (4)
	askpass (155)
	ASMap (1)
	asmn (6)
	asnipe (0)
	ASpediaFI (16)
	ASpli (127)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (5)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (6)
	assertr (2)
	assertthat (2)
	AssessORF (168)
	ASSET (127)
	ASSIGN (144)
	assorthead (2091)
	AssotesteR (0)
	astsa (1)
	ASURAT (81)
	async (1)
	ATACCoGAPS (56)
	ATACseqQC (368)
	ATACseqTFEA (81)
	ATE (1)
	atena (105)
	AtlasRDF (21)
	ATR (0)
	atSNP (103)
	attachment (2)
	attempt (0)
	attract (125)
	AUC (1)
	AUCell (2511)
	audio (1)
	audited (1)
	auth0 (1)
	automap (3)
	autometric (1)
	autonomics (71)
	Autotuner (10)
	av (1)
	ava2 (1)
	AWFisher (82)
	aws (2)
	aws.ec2metadata (0)
	aws.s3 (5)
	aws.signature (5)
	awsMethods (1)
	awst (71)
	azcore (1)
	Azimuth (0)
	AzureAuth (1)
	AzureGraph (5)
	AzureRMR (5)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (90)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (40)
	backports (120)
	bacon (139)
	bacr (0)
	BADER (103)
	badger (1)
	badminton (1)
	BadRegionFinder (82)
	BAGS (108)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (605)
	bambu (279)
	bamsignals (1029)
	BANDITS (106)
	bandle (75)
	Banksy (133)
	banocc (102)
	barcodetrackR (74)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (1)
	base64url (1)
	basecallQC (93)
	basefun (0)
	basemaps (1)
	BaseSpaceR (104)
	Basic4Cseq (107)
	BASiCS (154)
	BASiCStan (104)
	BasicSTARRseq (80)
	basilisk (3634)
	basilisk.utils (3382)
	batchelor (3976)
	BatchJobs (1)
	BatchQC (130)
	batchtools (0)
	battenberg (1)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (76)
	bayesm (5)
	bayesmeta (0)
	BayesPeak (39)
	bayespeak (0)
	BayesPen (0)
	bayesplot (11)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (252)
	bayestestR (11)
	BayesX (0)
	bayNorm (104)
	baySeq (456)
	bayseq (1)
	BB (1)
	BBCAnalyzer (95)
	BBmisc (1)
	bbmle (13)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (1)
	bcp (1)
	BCRANK (120)
	BCS.OptimizedDesignsForPrism (1)
	BCS.RSB (1)
	bcSeq (80)
	BDgraph (0)
	BDMMAcorrect (32)
	bdsmatrix (14)
	BE (1)
	beachmat (16163)
	beachmat.hdf5 (117)
	beachmat.tiledb (0)
	beadarray (695)
	beadarraySNP (69)
	BeadDataPackR (574)
	BeadExplorer (5)
	beanplot (1)
	BEARscc (74)
	BEAT (103)
	beaver (1)
	BEclear (105)
	bedr (0)
	beepr (1)
	beer (75)
	beeswarm (1)
	bench (0)
	benchdamic (89)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (1)
	BERT (46)
	Bessel (0)
	bestglm (1)
	bestNormalize (2)
	betaHMM (43)
	betareg (1)
	betr (38)
	bettermc (1)
	bettr (41)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (66)
	bgafun (40)
	BgeeCall (68)
	BgeeDB (148)
	BGLR (1)
	BGmix (33)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (111)
	BH (235)
	BHC (90)
	BIApylon (1)
	BiasedUrn (12)
	BIAutils (1)
	bib2df (1)
	bibtex (1)
	BicARE (141)

	biclust (0)
	BIEN (1)
	bife (0)
	BiFET (83)
	biganalytics (0)
	bigassertr (0)
	bigD (11)
	bigdist (0)
	BiGGR (105)
	BIGL (0)
	biglasso (0)
	biglm (4)
	biglmm (0)
	bigmelon (94)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (36)
	bigparallelr (0)
	bigPint (25)
	bigreadr (0)
	bigrquery (14)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
	bigutilsr (0)
	billboarder (9)
	bim (4)
	BiMax (0)
	binb (1)
	BindingSiteFinder (76)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (4)
	bioassayR (113)
	biobank (1)
	Biobase (49092)
	biobase (1)
	BioBase (1)
	biobroom (235)
	biobtreeR (66)
	bioc::GenomeInfoDbData (0)
	bioCancer (100)
	BioCartaImage (61)
	BiocBaseUtils (6775)
	BiocBook (70)
	BiocBookDemo (3)
	BiocCaseStudies (44)
	BiocCheck (1712)
	biocDatasets (9)
	BiocDockerManager (12)
	BiocFHIR (67)
	BiocFileCache (26116)
	BiocFileCaches (1)
	BiocGenerics (57644)
	BioCGenerics (0)
	biocGraph (262)
	BiocHail (44)
	BiocHubsShiny (96)
	BiocInstaller (273)
	biocinstaller (1)
	Biocinstaller (1)
	BiocInstallerf (0)
	BiocIO (19978)
	BiocManager (333)
	biocmanager (1)
	BiocNeighbors (11164)
	biocneighbors (1)
	BiocOncoTK (76)
	Bioconductor (1)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (103)
	BiocParallel (41672)
	BiocPkgTools (148)
	biocroxytest (52)
	BiocSet (320)
	BiocSingular (12736)
	BiocSklearn (111)
	BiocStyle (5672)
	biocthis (245)
	BiocVersion (60342)
	Biocversion (1)
	biocversion (1)
	BiocVersionBiocVersion (1)
	biocViews (4363)
	BiocWorkflowTools (187)
	biodb (160)
	biodbChebi (86)
	biodbExpasy (60)
	biodbHmdb (79)
	biodbKegg (75)
	biodbLipidmaps (41)
	biodbMirbase (22)
	biodbNcbi (69)
	biodbNci (76)
	biodbUniprot (68)
	bioDist (263)
	BiodiversityR (1)
	BioGA (23)
	Biogenerics (1)
	BioGenerics (0)
	biom (0)
	biomanager (0)
	BioManager (1)
	biomaRt (22933)
	biomart (1)
	biomartr (1)
	BioMedR (5)
	biomformat (5535)
	BioMM (17)
	biomod2 (1)
	BioMVCClass (109)
	biomvRCNS (108)
	BioNAR (84)
	BioNERO (279)
	BioNet (270)
	BioNetStat (80)
	BioPlex (7)
	BioQC (142)
	BioSeqClass (42)
	biosigner (117)
	biostat3 (1)
	biostatR (0)
	biostatUtil (0)
	Biostring (1)
	Biostrings (48706)
	biostrings (1)
	biosvd (36)
	BioTIP (92)
	biotmle (84)
	biotools (1)
	BioVersion (1)
	biovizBase (5280)
	BiplotML (1)

	BiRewire (167)
	birta (38)
	birte (22)
	biscuiteer (93)
	biscuiteerData (1)
	BiSeq (147)
	bit (102)
	bit64 (67)
	bitops (93)
	BitSeq (51)
	bizdays (2)
	bkbutils (1)
	blacksheepr (89)
	bladderbatch (1)
	BlakerCI (0)
	blastula (1)
	blavaan (1)
	blima (98)
	BLMA (99)
	blme (6)
	blob (53)
	blockcluster (1)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (145)
	bluster (5653)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (0)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (208)
	bnem (84)
	bnlearn (2)
	BOBaFIT (79)
	BOIN (0)
	bold (1)
	bookdown (34)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (84)
	bootstrap (0)
	borealis (78)
	Boruta (0)
	botor (0)
	box (10)
	box.linters (1)
	BPCells (1)
	bpcp (0)
	BPRMeth (101)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (154)
	brainflowprobes (46)
	brainImageR (4)
	BrainSABER (12)
	BrainStars (36)
	branchpointer (105)
	brave (0)
	breakpointR (85)
	breakpointRdata (1)
	brendaDb (75)
	brew (46)
	BREW3R.r (40)
	BRGenomics (101)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (42)
	BridgeDbR (101)
	bridgedist (0)
	bridgesampling (0)
	brio (172)
	brms (1)
	brmsmargins (0)
	broadSeq (25)
	Brobdingnag (1)
	broman (1)
	broom (116)
	broom.helpers (17)
	broom.mixed (1)
	broomExtra (1)
	BrowserViz (164)
	BrowserVizDemo (15)
	bs4Dash (8)
	BSgenome (16419)
	bsgenome (0)
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	SpotSweeper (39)
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	statsExpressions (3)
	statTarget (118)
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	StepReg (1)
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	stringfish (7)
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	strucchange (1)
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	StructuralVariantAnnotation (235)
	structuralvariantannotation (1)
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	SUITOR (58)
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	SummarizedExperiment (39715)
	summarizedExperiment (1)
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	supraHex (425)
	surfaltr (68)
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	survtmle (1)
	survtype (74)
	Sushi (72)
	susieR (18)
	sva (7491)
	svaNUMT (77)
	SVAPLSseq (12)
	svaRetro (80)
	svd (1)
	svDialogs (1)
	svglite (26)
	svGUI (0)
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	SVMDO (103)
	svMisc (1)
	svUnit (0)
	swagger (1)
	swamp (1)
	SWATH2stats (90)
	SwathXtend (87)
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	Swiffer (1)
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	switchBox (129)
	switchde (80)
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	systemfonts (281)
	systemPipeR (1177)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (83)
	systemPipeTools (79)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (0)
	tables (2)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (71)
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	target (77)
	TargetDecoy (79)
	targets (9)
	TargetScore (106)
	TargetSearch (107)
	targetsearch (0)
	TarSeqQC (32)
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	taxize (2)
	taxonomizr (1)
	taylor (1)
	TBSignatureProfiler (86)
	TCC (250)
	TCCGUI (1)
	TCGAbiolinks (4214)
	TCGAbiolinksGUI (35)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (778)
	tcltk (1)
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	tclust (1)
	TCseq (328)
	TDARACNE (40)
	TDbasedUFE (80)
	TDbasedUFEadv (74)
	TeachingDemos (2)
	teal (2)
	teal.builder (1)
	teal.builder.modules (1)
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	teal.data (3)
	teal.goshawk (1)
	teal.logger (2)
	teal.modules.clinical (1)
	teal.modules.general (1)
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	teal.osprey (1)
	teal.reporter (1)
	teal.slice (3)
	teal.transform (1)
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	TEKRABber (183)
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	tensor (1)
	tensorA (12)
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	TEQC (119)
	tergm (0)
	tern (3)
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	ternarynet (91)
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	tester (1)
	TestGenerator (1)
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	texreg (2)
	text2vec (1)
	textfeatures (1)
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	textshaping (180)
	TFARM (74)
	tfautograph (1)
	TFBSTools (3548)
	tfbstools (0)
	tfdatasets (0)
	TFEA.ChIP (101)
	TFHAZ (78)
	TFisher (1)
	TFMPvalue (7)
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	tfse (1)
	TFutils (93)
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	TH.data (121)
	thematic (6)
	themeSanofi (1)
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	this.path (1)
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	ThresholdROC (0)
	tibbke (1)
	tibble (32)
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	tidybayes (1)
	tidybulk (312)
	tidycensus (9)
	tidyclust (2)
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	tidyCoverage (44)
	tidydr (1)

	tidyFlowCore (23)
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	tidygraph (36)
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	tidyposterior (1)
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	tidyproteomics (1)
	tidyquant (1)
	tidyr (258)
	tidyrules (0)
	tidysbml (15)
	tidyselect (245)
	tidySEM (1)
	tidyseurat (1)
	tidySingleCellExperiment (228)
	tidySpatialExperiment (55)
	tidySummarizedExperiment (371)
	tidytable (1)
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	tidytlg (1)
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	tidytree (36)
	tidyTree (0)
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	tidyxl (1)
	tiff (3)
	tigre (120)
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	tikzDevice (1)
	tiledb (1)
	TileDBArray (82)
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	tilingArray (158)
	timechange (196)
	timecourse (124)
	timeDate (45)
	timeOmics (104)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (92)
	timeSeries (13)
	TimeSeriesExperiment (17)
	timetk (2)
	timevis (1)
	TimiRGeN (42)
	Timma (0)
	TIN (89)
	TINC (0)
	tinkr (0)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (378)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (251)
	TitanCNA (121)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1353)
	tkwidgets (1)
	tldrm (1)
	TLMoments (1)
	tLOH (68)
	tm (5)
	tmap (1)
	tmaptools (1)
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	tmcn (1)
	TMixClust (101)
	tmle (2)
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	tmvnsim (1)
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	TnT (52)
	TOAST (420)
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	tofsims (18)
	tokenizers (4)
	tokupika (0)
	tolerance (0)
	tomoda (75)
	tomoseqr (63)
	tools (1)
	toOrdinal (1)
	TOP (64)
	ToPASeq (29)
	topconfects (171)
	topdownr (94)
	topGO (2928)
	topgo (0)
	topicmodels (1)
	topr (6)
	torch (1)
	tornado (1)
	tourr (1)
	ToxicoGx (91)
	Tplyr (2)
	TPP (135)
	TPP2D (76)
	tpSVG (43)
	tracee (1)
	tracktables (169)

	trackViewer (593)
	trackviewer (0)
	tradeSeq (536)
	tradeseq (1)
	traits (1)
	TrajectoryGeometry (59)
	TrajectoryUtils (1933)
	tram (0)
	TraMineR (0)
	transcriptogramer (87)
	transcriptR (100)
	transformGamPoi (97)
	transformr (0)
	transite (83)
	translations (1)
	tRanslatome (220)
	transmogR (42)
	transomics2cytoscape (85)
	transport (1)
	TransView (93)
	TraRe (10)
	traseR (94)
	Travel (5)
	traviz (73)
	tree (0)
	TreeAndLeaf (141)
	treeclimbR (45)
	treeio (20927)
	treekoR (87)
	treemap (1)
	treemapify (1)
	treesitter.r (1)
	treespace (0)
	TreeSummarizedExperiment (1980)
	TreeTools (0)
	TREG (68)
	trena (30)
	TReNA (3)
	trendeval (1)
	Trendy (80)
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	triangle (1)
	tricycle (240)
	TrIdent (0)
	triebeard (3)
	triform (40)
	trigger (112)
	trimcluster (0)
	trio (143)
	tripack (0)
	triplex (109)
	tripr (67)
	tRNA (134)
	tRNAdbImport (112)
	tRNAscanImport (92)
	TRONCO (107)
	trtf (0)
	truncdist (0)
	truncnorm (4)
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	trust (0)
	tryCatchLog (1)
	TSAR (52)
	tsbox (1)
	TSCAN (652)
	tscR (15)
	tseries (10)
	tseriesChaos (0)
	tsfeatures (2)
	tsibble (1)
	tsibbledata (1)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (16)
	tspair (43)
	TSRchitect (19)
	TSSi (35)
	tsvio (1)
	ttdo (0)
	ttgsea (76)
	TTMap (80)
	TTR (6)
	ttservice (1)
	tufte (0)
	tune (14)
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	tuneRanger (1)
	TurboNorm (109)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (93)
	twang (2)
	twangContinuous (0)
	tweeDEseq (156)
	tweedie (0)
	tweenr (33)
	twilight (131)
	twoddpcr (80)
	TwoSampleMR (0)
	twosamples (1)
	txcutr (68)
	TxDb.Hsapiens.UCSC.hg19.knownGene (6)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (5)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (2623)
	tximeta (1036)
	tximport (3412)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (14)
	txtq (0)
	TypeInfo (88)
	tzdb (40)

U

V

	V.PhyloMaker2 (1)
	V8 (78)
	VAExprs (65)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (262)
	vaplot (0)
	vapour (0)
	VarCon (65)
	variables (0)
	variancePartition (946)
	VariantAnnotation (11943)
	variantannotation (1)
	VariantExperiment (67)
	VariantFiltering (125)
	VariantTools (166)
	VariantWarehouseBMS (1)
	varImp (0)
	vars (1)
	vasp (7)
	VaSP (80)
	vaultr (1)
	vbmp (130)
	VBsparsePCA (0)
	vcd (4)
	VCFArray (84)
	vcfR (1)

	vcr (0)
	vctrs (201)
	vdbR (0)
	vdiffr (1)
	VDJdive (71)
	Vega (31)
	VegaMC (98)
	vegan (32)
	vegawidget (1)
	velociraptor (157)
	velocyto.R (1)
	veloviz (65)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (9)
	VennDetail (279)
	VennDiagram (1)
	venneuler (1)
	VERSO (68)
	vetiver (1)
	VGAM (15)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vidger (135)
	VIM (1)
	vimp (1)
	VineCopula (0)

	vioplot (1)
	vip (1)
	viper (735)
	vipor (16)
	viridis (208)
	viridislite (0)
	viridisLite (55)
	virtualArray (12)
	visdat (1)
	ViSEAGO (138)
	VisiumIO (46)
	visiumStitched (1)
	visNetwork (3)
	visOmopResults (1)
	visR (1)
	vissE (122)
	vistime (19)
	vitae (1)
	Voyager (176)
	vpc (0)
	VplotR (78)
	vroom (115)
	vscDebugger (1)
	vsclust (70)
	vsn (5097)
	vtpnet (112)
	vulcan (89)

W

	WA43966.shareR.3043877 (1)
	waddR (66)
	waffle (1)
	waiter (10)
	wakefield (0)
	waldo (184)
	wallace (1)
	warp (16)
	wateRmelon (836)
	wavClusteR (95)
	waved (1)
	waveslim (1)
	waveTiling (39)
	wdm (0)
	wdman (2)
	weaver (105)
	webbioc (114)
	webchem (1)
	webdriver (0)
	webfakes (1)
	WebGestaltR (1)
	webmockr (0)
	webp (1)
	webshot (24)

	webshot2 (2)
	websocket (20)
	webutils (2)
	WeightIt (3)
	weights (3)
	WeightSVM (0)
	weitrix (78)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (12)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (24)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (5)
	widgetTools (1354)
	widgettools (1)
	wiggleplotr (164)
	WikidataQueryServiceR (0)
	WikidataR (0)
	WikipediR (4)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (295)
	wk (40)
	wmtsa (1)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (13)
	workflowsets (13)
	WorldFlora (1)
	worrms (2)
	wpm (78)
	wppi (52)
	wrapr (1)
	Wrench (1630)
	writexl (33)
	WriteXLS (4)
	wrMisc (1)
	WRS2 (2)

X

Y

	y2hStat (3)
	yaImpute (1)
	yaml (282)
	yamss (90)

	YAPSA (111)
	yaqcaffy (42)
	yardstick (20)
	yarn (125)

	ylab.utils (0)
	ymlthis (0)
	yspec (1)
	yulab.utils (69)

Z

	zCompositions (10)
	zeallot (0)
	zellkonverter (1421)
	zelusutils (1)
	zen4R (0)
	zenith (121)

	zFPKM (133)
	zinbwave (918)
	zingeR (1)
	zip (195)
	Ziploc (1)
	zitools (17)

	zli (1)
	zlibbioc (54633)
	zoo (28)
	ZygosityPredictor (63)

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