#
#	This is Makefile for CTF Correction Demo(MultiCompensation).
#

#### Root Makefile ####
MAKE_ROOT=CTFCorrection5

#### Input extention ####
# These extensions must all be different.
INI_MRC_EXT=inimrc
INPUT_2D_EXT=2d
CTF_2D_EXT=prectf
FFT_2D_EXT=fft
CTF_INFO_EXT=ctfinfo
OUT_CTF_EXT=ctf
OUT_TIFF_EXT=tiff

#### Suffixes rule ####

#### INCLUDE ####
-include ${EOS_HOME}/tutorial/TIPS/Help/Makefile/Makefile-lib
-include Makefile.config

#### Definition ####
CCD=14.0

# Input FileName
INPUT=Input

### For mrcImageNoiseAdd
NSRATIO=0

### For mrcImageSiemensStar
SSTAR_SHAPE=0

## For mrcImageCTFObservation
CTF_KV=200
CTF_CS=2.1
CTF_DEFOCUS=27000
CTF_AIN=0.3	#need CTF_MODE +32
CTF_MODE=32

## For mrcImageCTFObservation 2
CTF2_KV=200
CTF2_CS=2.1
CTF2_DEFOCUS=9000
CTF2_AIN=0.3	#need CTF2_MODE +32
CTF2_MODE=32

#### For Works ####
JOP_NUM=-j 3


#### Rules of the list created ####


##### Commands #####
help_CTFCorrection5::
	@echo "This is Makefile for CTF Correction Demo(MultiCompensation)."

all3::
	make InitialCTFDataFromMRC;
	make ProcessForInput;
	make ProcessForInput2;
	make TIF2CTF2;
	make ImageAverage

all3S::
	make InitialSiemensStar;
	make ProcessForInput;
	make ProcessForInput2;
	make TIF2CTF2;
	make ImageAverage

all5::
	make InitialCTFDataFromMRC;
	make ProcessForInput;
	make ProcessForInput2;
	make TIF2CTF2;
	make MULTICTF;
	make CTF2TIFF;

all5S::
	make InitialSiemensStar;
	make ProcessForInput;
	make ProcessForInput2;
	make TIF2CTF2;
	make MULTICTF;
	make CTF2TIFF;

##### Commands(Input to Output) #####

