mrcImageCTFObservation

Usage

Usage: mrcImageCTFObservation
Options:
    [-i[nput]            In                  (stdin     ).as(inFile::mrcImage    ) ] :Essential :Input:2D
    [-o[utput]           Out                 (stdout    ).as(outFile::mrcImage   ) ] :Essential :Output:2D
    [-ctf                CTF                 (stdin     ).as(inFile::ASCII       ) ] :Optional  :Input:ctfInfo
    [-kV                 kV                  (200       ).as(Real                ) ] :Optional  :AccVol[kV]
    [-Cs                 Cs                  (2.1       ).as(Real                ) ] :Optional  :Cs[mm]
    [-df                 Defocus             (27000     ).as(Real                ) ] :Optional  :Defocus [A]:under(+)
    [-A                  AoverP              (0.0       ).as(Real                ) ] :Optional  :AmplitudeContrast/PhaseContrast
    [-Ain                Ain                 (0.0       ).as(Real                ) ] :Optional  :IlluminationAperture[mrad]
    [-white              WhiteNoise          (1.0       ).as(Real                ) ] :Optional  :WhiteNoise(N/S)
    [-SinWin             SinWinRmin          (0.1       ).as(Real                ) 
                         SinWinRmax          (1.0       ).as(Real                ) ] :Optional  :Windowing by sine function from Rmin[A] to Rmax[A]
    [-ctfMode            ctfMode             (0         ).as(Integer             ) ] :Optional  :CTFMode
    [-Astig[matism]      dfMin               (0         ).as(Real                ) 
                         dfMax               (0         ).as(Real                ) 
                         asAxis              (0         ).as(Real                ) ] :Optional  :With Atigmatism
    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
----- ctfMode -----
-ctfMode 0  : Phase Only
-ctfMode 1  : Phase and Amplitude 
-ctfMode 32  : With Illumination Angle
-ctfMode 256  : As Absolute Value