mrcImagePad
Usage
Usage: mrcImagePad
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :Input DataFile
[-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output DataFile
[-W[idth] Width (0 ).as(Integer ) ] :Optional :Width[pixel]
[-H[eight] Height (0 ).as(Integer ) ] :Optional :Height[pixel]
[-V[alue] Value (0.0 ).as(Real ) ] :Optional :Padding Value(float on avgrage density)
[-E[xpected]V[alue] ExpectedValue (0.0 ).as(Real ) ] :Optional :Expected Value for Background
[-AW AvgWnd (2000.0 ).as(Real ) ] :Optional :Averaging Window Size [A]
[-AWMin AWMin (20 ).as(Real ) ] :Optional :Averaging Window Size[pixel]
[-AWMax AWMax (22 ).as(Real ) ] :Optional :Averaging Window Size[pixel]
[-Tilt TiltAxisAngle (0 ).as(Real )
TiltAngle (0 ).as(Real ) ] :Optional :TiltImage: TiltAxisAngle TiltAngle
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :Configuration File
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Mode -----
0: Pad average density(Image Center)
1: Pad average density of x=0 and x=MAX(x)(Image Center)
2: Pad dynamic average density of x=0 and x=MAX(x)(Image Center)
3: Pad average density of x=0,MAX(x) and y=0,MAX(y), (Image Center)
4: Pad average density of bottom left
5: Pad value (Image Center):Image Value(No Change)
6: Pad value of bottom left:Image Value(No Change)
7: Pad value estimated from outside circle
8: Pad value estimated from outside ring: -AWMin -AMax
9: Pad value is Value (Currently the same as 5)
10: Periphery Masking Using ExpectedValue
11: Normalized Padding using (I(x,y)-avg(bg))/avg(bg))
12: Normalized Padding using (I(x,y)-avg(I))/sqrt(var(I)))
13: Normalized Padding using (I(x,y)-avg(bg))/sqrt(var(bg)))
14: Normalized Padding using (I(x,y)-avg(bg))/(avg(I)-avg(bg))
15: Tilted Image Circle Average: Need two values of TiltAxisAngle TiltAngle