mrcImagePrint

Usage

Usage: mrcImagePrint
Options:
    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputImageFile
    [-o[utput]           Out                 (stdout    ).as(outFile             ) ] :Optional  :OutputImageFile
    [-H[ighThreshold]    thresHigh           (0.0       ).as(Real                ) ] :Optional  :High Threshold
    [-L[owThreshold]     thresLow            (1.0       ).as(Real                ) ] :Optional  :Low Threshold
    [-Section            section             (z         ).as(Character           ) ] :Optional  :[z|x|y]Section: Def: z-section
    [-x[Section]         xMin                (0         ).as(Integer             ) 
                         xMax                (0         ).as(Integer             ) ] :Optional  :x section
    [-y[Section]         yMin                (0         ).as(Integer             ) 
                         yMax                (0         ).as(Integer             ) ] :Optional  :y section
    [-z[Section]         zMin                (0         ).as(Integer             ) 
                         zMax                (0         ).as(Integer             ) ] :Optional  :z section
    [-S[cale]            Scale               (1.0       ).as(Real                ) ] :Optional  :Scale(Centre is Bottom Left): -S 1 := 1 mm/pixel
    [-A[bsolute]S[cale]  AbScale             (1.0       ).as(Real                ) ] :Optional  :Scale(Centre is Bottom Left): -AS 1 := 1 mm/A (Real) or 1 mm/A-1 (Fourier Space)
    [-E[nlarge]          Enlarge             (1.0       ).as(Real                ) ] :Optional  :Enlargement(image center is center)
    [-center             cx                  (0.0/* in case of FT or N.x/2.0 in case of Image*/).as(Real                ) 
                         cy                  (0.0/* in case of FT or N.y/2.0 in case of Image */).as(Real                ) ] :Optional  :Center of a printed image
    [-C[ontour]          contourLevel        (1.0       ).as(Real                ) ... ] :Variable  :ContourLevel
    [-I[nverse]                                                                    ] :Optional  :Black is High Density.
    [-A[uto]                                                                       ] :Optional  :HighThres=Mean-SD, LowThres=Mean+SD
    [-AC[ontour]         AutoContour         (10        ).as(Integer             ) ] :Optional  :Auto Contour(thresHigh <-> mean)
    [-PC[ontour]         PeakContour         (10        ).as(Integer             ) ] :Optional  :Peak Contour(thresHigh <-> (mean+thresHigh)/2
    [-AC[ontour]2        AutoContour2        (10        ).as(Integer             ) ] :Optional  :Auto Contour2(thresHigh <-> thresLow)
    [-Y[expand]          Yexpand             (1         ).as(Real                ) ] :Optional  :Y-axis expanding
    [-RGB                Red                 (0         ).as(Real                ) 
                         Green               (0         ).as(Real                ) 
                         Blue                (0         ).as(Real                ) ] :Optional  :Contour Color Mode: RGB
    [-RGBGradient        RedFirst            (0         ).as(Real                ) 
                         GreenFirst          (0         ).as(Real                ) 
                         BlueFirst           (0         ).as(Real                ) 
                         RedLast             (0         ).as(Real                ) 
                         GreenLast           (0         ).as(Real                ) 
                         BlueLast            (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: RGB
    [-HSB                Hue                 (0         ).as(Real                ) 
                         Saturation          (0         ).as(Real                ) 
                         Brightness          (0         ).as(Real                ) ] :Optional  :Contour Color Mode: HSB
    [-HSBGradient        HueFirst            (0         ).as(Real                ) 
                         SaturationFirst     (0         ).as(Real                ) 
                         BrightnessFirst     (0         ).as(Real                ) 
                         HueLast             (0         ).as(Real                ) 
                         SaturationLast      (0         ).as(Real                ) 
                         BrightnessLast      (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: HSB
    [-LineColourRGB      LineRed             (0         ).as(Real                ) 
                         LineGreen           (0         ).as(Real                ) 
                         LineBlue            (0         ).as(Real                ) ] :Optional  :Contour Color Mode: RGB
    [-LineColourRGBGradientLineRedFirst        (0         ).as(Real                ) 
                         LineGreenFirst      (0         ).as(Real                ) 
                         LineBlueFirst       (0         ).as(Real                ) 
                         LineRedLast         (0         ).as(Real                ) 
                         LineGreenLast       (0         ).as(Real                ) 
                         LineBlueLast        (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: RGB
    [-LineColourHSB      LineHue             (0         ).as(Real                ) 
                         LineSaturation      (0         ).as(Real                ) 
                         LineBrightness      (0         ).as(Real                ) ] :Optional  :Contour Color Mode: HSB
    [-LineColourHSBGradientLineHueFirst        (0         ).as(Real                ) 
                         LineSaturationFirst (0         ).as(Real                ) 
                         LineBrightnessFirst (0         ).as(Real                ) 
                         LineHueLast         (0         ).as(Real                ) 
                         LineSaturationLast  (0         ).as(Real                ) 
                         LineBrightnessLast  (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: HSB
    [-LineChange         LineColorChange     (0.1       ).as(Real                ) ] :Optional  :Contour Color Change
    [-LineWidthStart     LineWidthStart      (0.1       ).as(Real                ) ] :Optional  :Contour Line Width Step
    [-LineWidthStep      LineWidthStep       (0.05      ).as(Real                ) ] :Optional  :Contour Line Width Step
    [-ReverseOrder                                                                 ] :Optional  :Reverse Print Order
    [-Untwist            untwist             (0.0       ).as(Real                ) ] :Optional  :Untwist Angle [degree/A], example: (-13,28) = 0.4709576
    [-UpsideDown                                                                   ] :Optional  :Upside Down
    [-Centre                                                                       ] :Optional  :Image Centre is at the centre of paper.
    [-CircleRadius       CircleRadius        (0.5       ).as(Real                ) ] :Optional  :Radius of circles in the case of imageCircles
    [-m[ode]             mode                (49        ).as(Integer             ) ] :Optional  :Mode
----- mode -----
		     1: ImageDensity
		     2: Contour(DiffrentLineWidth)
		     4: Contour(SameLineWidth)
		     8: BlackCircles
		    16: Scale
		    32: Centre Mark
		16777216: Amplitude by AsciiFile
		33554432: Log of Amplitude by AsciiFile
		67108864: Phase by AsciiFile
----- Attention !! -----
				-C  option is stronger than -AC and -PC
				-PC option is stronger than -AC
					-AC: (i+1)*(max-maen)  /(AC+1) + mean 
					-PC: (i  )*(max+mean)/2)/AC     + (max+mean)/2
----- Attention 2!! -----
				-AS option is stronger than -S option
				The default value of -AS option is ignored.
				The default value of -S option is used.
				Both options are applied to y-axis.