mrcImage1dShiftAverageByAnnealing

Usage

Usage: mrcImage1dShiftAverageByAnnealing
Options:
    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
    [-s[ignal position]  Signal              (NULL      ).as(inFile              ) ] :Essential :File to define position of signal
    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
    [-r[ange]            range               (0         ).as(Integer             ) ] :Optional  :Search range of shift.Default:Nx
    [-d[elta]            delta               (1.0       ).as(Real                ) ] :Optional  :Spacing of molecule(Pixel).
    [-T[eperature]       temperature         (1.0       ).as(Real                ) ] :Optional  :Initial temperature.
    [-iter[ation]        iter                (1000      ).as(Integer             ) ] :Optional  :Number of iteration before reducing temperature.
    [-eps[ilon]          eps                 (0.001     ).as(Real                ) ] :Optional  :Temperature(T) reduced to (1-epsilon)T.
    [-tol                tol                 (1e-2      ).as(Real                ) ] :Optional  :Number to identify convergence
    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
    [-M[ode2]            mode2               (0         ).as(Integer             ) ] :Optional  :Mode2
----- mode -----
0:All search 
1:annealing method 
2:mode 1 and refine by powel.
3:mode 1 and refine by annealing.
----- mode2 -----
0:by amplitude 
1:by power 
2:by amplitude using only phase 
3:by power using only phase 
4:by amplitude using S/sqrt(S) 
5:by power using only  S/sqrt(S)