ctfDetermine
Usage
Usage: ctfDetermine
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile: mrcImage
[-o[utput] Out (NULL ).as(appendFile ) ] :Essential :OutputDataFile: Parameters
[-D[efocus] Defocus (0.0 ).as(Real ) ] :Optional :InitialDefocus[A]
[-Cs Cs (1.7 ).as(Real ) ] :Optional :InitialCs[mm]
[-Cc Cc (1.2 ).as(Real ) ] :Optional :InitialCs[mm]
[-dE dE (0.2 ).as(Real ) ] :Optional :InitialCs[mm]
[-Ac[cerratedVoltage]Ac (200 ).as(Real ) ] :Optional :Ac[kV]
[-CutLow CutLow (0.05 ).as(Real ) ] :Optional :CutOffLowFrequncy[/A]
[-CutHigh CutHigh (0.5 ).as(Real ) ] :Optional :CutOffHighFrequncy[/A]
[-I0 I0 (1.0 ).as(Real ) ] :Optional :I0
[-ratio ratioOfAmpToPhase (0.1 ).as(Real ) ] :Optional :ratioOfAmpToPhase
[-Ai Ai (0.03 ).as(Real ) ] :Optional :IlluminationAngle[mrad]
[-BofMTF BofMTF (15.0 ).as(Real ) ] :Optional :B of MTF [A]
[-BofV[ibration] BofVibration (3.0 ).as(Real ) ] :Optional :B of Vibration [A]
[-Mag[nification] Magnification (1.0 ).as(Real ) ] :Optional :Magnification
[-[White]Noise WhiteNoise (0.0 ).as(Real ) ] :Optional :Signal/Noise Ratio
[-[White]Noise2 WhiteNoise2 (0.0 ).as(Real ) ] :Optional :Signal/Noise Ratio
[-MolcEnv MolcEnv (0.0 ).as(Real ) ] :Optional :Gaussian: Molcular Envelop [A]
[-MolcEnv2 MolcEnvTable (NULL ).as(inFile ) ] :Optional :Table: Molcular Envelop
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
[-min min (-10 ).as(Real ) ] :Optional :min of coefficient area
[-max max (10 ).as(Real ) ] :Optional :max of coefficient area
[-s[tep] step (0.01 ).as(Real ) ] :Optional :step of coefficient
[-d[egree] degree (6 ).as(Integer ) ] :Optional :agree of function
[-S[ection] section (4 ).as(Integer ) ] :Optional :section number of fft
>>> Mode <<<
0 : MinMax Methods (Henderson-like CTF determination)
16: Fitting Methods
32: Differential Methods
64: Covariance Methods
96: Differential & covariance Methods
128: MinSquare Methods
160: Differential+MinSquare Methods by Imamura
161: Differential+MinSquare Methods+NoiseRemoval(+1)
163: Differential+MinSquare Methods+NoiseRemoval(+1)+EnvelopeFromLocalMaxima(+2)