AnnotationGxR is an open-source statistical environment which can be easily modified to enhance its functionality via packages. AnnotationGx is a R package hosted on Bioconductor and can be installed using BiocManager.
AnnotationGxWe hope that AnnotationGx will be useful for your research. Please use the following information to cite the package and the overall approach. Thank you!
## Citation info
citation("AnnotationGx")
#> Warning in citation("AnnotationGx"): could not determine year for
#> 'AnnotationGx' from package DESCRIPTION file
#> To cite package 'AnnotationGx' in publications use:
#>
#> Tran M, Joseph J, Eeles C, Haibe-Kains B (????). _AnnotationGx:
#> AnnotationGx: A package for building, updating and querying an
#> annotation database for pharmaco-genomic data_. R package version
#> 0.99.2, <https://bhklab.github.io/AnnotationGx/>.
#>
#> A BibTeX entry for LaTeX users is
#>
#> @Manual{,
#> title = {AnnotationGx: AnnotationGx: A package for building, updating and querying an
#> annotation database for pharmaco-genomic data},
#> author = {Michael Tran and Jermiah Joseph and Christopher Eeles and Benjamin Haibe-Kains},
#> note = {R package version 0.99.2},
#> url = {https://bhklab.github.io/AnnotationGx/},
#> }AnnotationGxsessionInfo()
#> R version 4.6.0 alpha (2026-04-05 r89794)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.4 LTS
#>
#> Matrix products: default
#> BLAS: /home/biocbuild/bbs-3.23-bioc/R/lib/libRblas.so
#> LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_GB LC_COLLATE=C
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: America/New_York
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] data.table_1.18.2.1 AnnotationGx_0.99.2
#>
#> loaded via a namespace (and not attached):
#> [1] crayon_1.5.3 cli_3.6.6 knitr_1.51 rlang_1.2.0
#> [5] xfun_0.57 otel_0.2.0 jsonlite_2.0.0 glue_1.8.1
#> [9] backports_1.5.1 htmltools_0.5.9 sass_0.4.10 rappdirs_0.3.4
#> [13] rmarkdown_2.31 evaluate_1.0.5 jquerylib_0.1.4 fastmap_1.2.0
#> [17] yaml_2.3.12 lifecycle_1.0.5 httr2_1.2.2 memoise_2.0.1
#> [21] compiler_4.6.0 digest_0.6.39 R6_2.6.1 curl_7.0.0
#> [25] parallel_4.6.0 magrittr_2.0.5 bslib_0.10.0 checkmate_2.3.4
#> [29] withr_3.0.2 tools_4.6.0 cachem_1.1.0