Changes in version 0.99.120 (2023-06-29)
General
o After the iNETgrate package was added to Bioconductor, Habil
removed it from the Bitbucket and Github repositories.
Changes in version 0.99.102 (2023-06-12)
Changes in existing functions
o In prepareSurvival and cleanAllData function, the default
values changes as follows: riskLow="Low" and riskHigh="High",
respectively.
Changes in version 0.99.100 (2023-06-09)
Changes in existing functions
o The Labels argument is removed from analyzeSurvival. and the
riskCol argument is added.
Changes in version 0.99.96 (2023-06-08)
Changes in existing functions
o The abnormalityCol argument is removed from accelFailAnalysis.
o The otherLabel argument is removed from prepareSurvival and
cleanAllData functions.
Changes in version 0.99.94 (2023-06-08)
Changes in existing functions
o The computeEigengenes, computeEigenloci, and sample2atient
functions were renamed to computEigengenes, computEigenloci,
and sample2pat, respectively.
o The makeNetwork function now saves the result for each mu in a
separate folder.
Changes in version 0.99.74 (2023-05-24)
General
o Data were compressed using "xz" to save 20% space.
Changes in existing functions
o The downloaData function is not exported anymore because it is
specific to the legacy TCGA data, which is no longer available.
Changes in version 0.99.70 (2023-05-23)
Changes in existing functions
o Habil renamed downloadData to downloaData and updated the
data.category argument of GDCquery.
o Habil removed the legacy option from the donwlowData function
because it is no longer supported by TCGAbiolinks.
Changes in version 0.99.64 (2023-05-11)
General
o Habil commented the installation command line in the vignette.
Changes in version 0.99.50 (2023-04-14)
General
o Habil changed function names to camelCase i.e, from
function.name to functionName.
Changes in version 0.99.46 (2023-04-11)
General
o Habil changed getwd() to tempdr() in the docs.
o Habil changed most of occurrences of cat() to paste().
o Habil changed most of occurrences of print() to message() or
Pigengene::message.if().
o Habil removed paste() inside all stop() to warning().
o Habil replaced dontrun with donttest.
Changes in version 0.99.30 (2023-04-06)
General
o Tested on R 4.3.
o TCGAbiolinks (<= 2.24.3) because of issues with newer versions.
Changes in version 0.5.42 (2021-10-31)
General
o Being prepared for submission to Bioconductor.
o Created.