Changes in version 2.31.1
- get_rel_df() to access ontology relation data frame required by the
Wang method (2024-08-13, Tue)
- a set of 'OntDb' methods for accessing sqlite data generated by the
'obolite' package (2024-08-13, Tue)
- use yulab.utils::yulab_msg() for startup message (2024-07-26, Fri)
Changes in version 2.30.0
- Bioconductor RELEASE_3_19 (2024-05-15, Wed)
Changes in version 2.29.2
- update buildGOmap() parameter to consistent with enricher() and
GSEA() (2024-02-06, Tue, #47)
Changes in version 2.29.1
- extend godata() to support passing a data.frame (can be output of
read.gaf() or read.blast2go()) to 'annoDb' (2023-01-16, Tue)
- deprecate 'OrgDb' and introduce new parameter 'annoDb' in godata()
- standardize the output of read.gaf() and read.blast2go()
- optimize buildGOmap()
Changes in version 2.28.0
- Bioconductor RELEASE_3_18 (2023-10-25, Wed)
Changes in version 2.27.3
- use check_installed() to check package dependency (2023-09-12, Tue,
#43)
Changes in version 2.27.2
- read.blast2go() to parse 'blast2go' result (2023-07-10, Mon, #41,
#42)
- move buildGOmap() and read.gaf() from 'clusterProfiler' (2023-07-10,
Mon)
Changes in version 2.27.1
- semantic similarity measurement support for MPO (2023-04-06, Thu)
- TCSS semantic similarity measurement support for DO and MPO
(2023-04-06, Thu)
Changes in version 2.26.0
- Bioconductor RELEASE_3_17 (2023-05-03, Wed)
Changes in version 2.24.0
- Bioconductor RELEASE_3_16 (2022-11-02, Wed)
Changes in version 2.23.1
- Replacing DO.db with HDO.db (2022-07-29, Mon)
Changes in version 2.22.0
- Bioconductor 3.15 release
Changes in version 2.21.1
- Avoid eval-parse in load_OrgDb() (2022-01-10, Mon)
Changes in version 2.20
- Bioconductor 3.14 release
Changes in version 2.19.1
- TCSS method (@qibaiqi, #35; 2021-08-02, Mon)
Changes in version 2.18.0
- Bioconductor 3.13 release
Changes in version 2.17.1
- bug fixed according to the update of GO.db (2020-10-29, Thu)
- https://github.com/YuLab-SMU/GOSemSim/issues/32
Changes in version 2.16.0
- Bioconductor 3.12 release (2020-10-28, Wed)
Changes in version 2.15.2
- new site, https://yulab-smu.top/biomedical-knowledge-mining-book/
for documentation (2020-09-04, Fri)
- update vignette
- update data/gotbl
Changes in version 2.15.1
- bug fixed of IC method when input IDs contain invalid terms.
(2020-07-25, Sat)
Changes in version 2.14.0
- Bioconductor 3.11 release
Changes in version 2.13.1
- add new citation (2020-03-19, Thu)
- fixed compiling error due to the change of Rcpp
- https://github.com/YuLab-SMU/GOSemSim/issues/27
Changes in version 2.7.1
- mgeneSim and mclusterSim now always return matrix (2018-08-08, Wed)
- https://www.biostars.org/p/330642/#331598
Changes in version 2.5.1
- return NA for deprecated IDs (2018-01-09, Fri)
- https://support.bioconductor.org/p/105822/#105840