ArrayExpress
This is the released version of ArrayExpress; for the devel version, see ArrayExpress.
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Bioconductor version: Release (3.20)
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.
Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan
Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>
Citation (from within R, enter
citation("ArrayExpress")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ArrayExpress")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ArrayExpress")
ArrayExpress: Import and convert ArrayExpress data sets into R object | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Microarray, OneChannel, Software, TwoChannel |
Version | 1.66.0 |
In Bioconductor since | BioC 2.3 (R-2.8) (16 years) |
License | Artistic-2.0 |
Depends | R (>= 2.9.0), Biobase(>= 2.4.0) |
Imports | oligo, limma, httr, utils, jsonlite, rlang, tools, methods |
System Requirements | |
URL |
See More
Suggests | affy |
Linking To | |
Enhances | |
Depends On Me | DrugVsDisease, maEndToEnd |
Imports Me | |
Suggests Me | Hiiragi2013, bapred, seeker |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ArrayExpress_1.66.0.tar.gz |
Windows Binary (x86_64) | ArrayExpress_1.66.0.zip |
macOS Binary (x86_64) | ArrayExpress_1.66.0.tgz |
macOS Binary (arm64) | ArrayExpress_1.66.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ArrayExpress |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ArrayExpress |
Bioc Package Browser | https://code.bioconductor.org/browse/ArrayExpress/ |
Package Short Url | https://bioconductor.org/packages/ArrayExpress/ |
Package Downloads Report | Download Stats |