ReactomeAnalysisRequest
                        ReactomeAnalysisRequest class
ReactomeAnalysisResult-class
                        ReactomeAnalysisResult class
add_dataset             add_dataset
add_dataset,ReactomeAnalysisRequest,DGEList-method
                        add_dataset - DGEList
add_dataset,ReactomeAnalysisRequest,EList-method
                        add_dataset - EList
add_dataset,ReactomeAnalysisRequest,ExpressionSet-method
                        add_dataset - ExpressionSet
add_dataset,ReactomeAnalysisRequest,data.frame-method
                        add_dataset - data.frame
add_dataset,ReactomeAnalysisRequest,matrix-method
                        add_dataset - matrix
analyse_sc_clusters     analyse_sc_clusters
analyse_sc_clusters,Seurat-method
                        analyse_sc_clusters - Seurat
analyse_sc_clusters,SingleCellExperiment-method
                        analyse_sc_clusters - SingleCellExperiment
break_names             break_names
checkRequestValidity    Check's if a ReactomeAnalysisRequest object is
                        valid
check_reactome_url      check_reactome_url
convert_reactome_result
                        Convert the Reactome JSON result to a
                        ReactomeAnalysisResult object
data_frame_as_string    Converts a data.frame to a string
                        representation
fetch_public_data       fetch_public_data
find_public_datasets    find_public_datasets
generate_metadata       generate_metadata
generate_metadata,data.frame-method
                        Generate metadata
generate_pseudo_bulk_data
                        generate_pseudo_bulk_data
generate_pseudo_bulk_data,Seurat-method
                        generate_pseudo_bulk_data - Seurat
generate_pseudo_bulk_data,SingleCellExperiment-method
                        generate_pseudo_bulk_data -
                        SingleCellExperiment
get_dataset_loading_status
                        Retrieves the status of the submitted dataset
                        loading request
get_fc_for_dataset      get_fc_for_dataset
get_is_sig_dataset      get_is_sig_dataset
get_public_species      get_public_species
get_reactome_analysis_result
                        Retrieves the result of the submitted analysis
                        using 'perform_reactome_analysis'
get_reactome_analysis_status
                        Retrieves the status of the submitted analysis
                        using 'start_reactome_analysis'
get_reactome_data_types
                        ReactomeGSA supported data types
get_reactome_methods    get_reactome_methods
get_result              get_result
get_result,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - get_result
is_gsva_result          is_gsva_result
load_public_dataset     load_public_dataset
names,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - names
open_reactome           open_reactome
open_reactome,ReactomeAnalysisResult-method
                        open_reactome - ReactomeAnalysisResult
pathways                pathways
pathways,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - pathways
perform_reactome_analysis
                        Perform a Reactome Analaysis
plot_correlations       plot_correlations
plot_correlations,ReactomeAnalysisResult-method
                        plot_correlations - ReactomeAnalysisResult
plot_gsva_heatmap       plot_gsva_heatmap
plot_gsva_heatmap,ReactomeAnalysisResult-method
                        plot_gsva_heatmap - ReactomeAnalysisResult
                        function
plot_gsva_pathway       plot_gsva_pathway
plot_gsva_pathway,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - plot_gsva_pathway
plot_gsva_pca           plot_gsva_pca
plot_gsva_pca,ReactomeAnalysisResult-method
                        plot_gsva_pca - ReactomeAnalysisResult
plot_heatmap            plot_heatmap
plot_heatmap,ReactomeAnalysisResult-method
                        plot_heatmap - ReactomeAnalysisResult
plot_volcano            plot_volcano
plot_volcano,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - plot_volcano
print,ReactomeAnalysisRequest-method
                        print - ReactomeAnalysisRequest
print,ReactomeAnalysisResult-method
                        print - ReactomeAnalysisResult
reactome_links          reactome_links
reactome_links,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - reactome_links
remove_dataset          remove_dataset
remove_dataset,ReactomeAnalysisRequest-method
                        remove_dataset - ReactomeAnalysisRequest
result_types            result_types
result_types,ReactomeAnalysisResult-method
                        ReactomeAnalysisResult - result_types
set_method              set_method
set_method,ReactomeAnalysisRequest-method
                        set_method - ReactomeAnalysisRequest
set_parameters          set_parameters
set_parameters,ReactomeAnalysisRequest-method
                        ReactomeAnalysisRequest - set_parameters
show,ReactomeAnalysisRequest-method
                        print - ReactomeAnalysisRequest
show,ReactomeAnalysisResult-method
                        show - ReactomeAnalysisResult
split_clustering        method implementation subclustering
split_random_sce        split SCE Object with random pooling
split_subclustering_sce
                        split SCE Object with random pooling
split_variable          split Seurat object by variable
split_variable_random   split Seurat object by random pooling
split_variable_sce      split SCE Object by variable
start_reactome_analysis
                        Start Reactome Analysis
wait_for_loading_dataset
                        wait_for_loading_dataset
