HiContactsData

This is the development version of HiContactsData; for the stable release version, see HiContactsData.

HiContacts companion data package

Bioconductor version: Development (3.22)

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiContactsData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiContactsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContactsData")

HiContactsData	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, SequencingData
Version	1.11.0
License	MIT + file LICENSE
Depends	ExperimentHub
Imports	BiocFileCache, AnnotationHub
System Requirements
URL	https://github.com/js2264/HiContactsData
Bug Reports	https://github.com/js2264/HiContactsData/issues

Suggests	testthat, methods, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	OHCA
Suggests Me	HiCExperiment, HiContacts, plyinteractions
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HiContactsData_1.11.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HiContactsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HiContactsData
Package Short Url	https://bioconductor.org/packages/HiContactsData/
Package Downloads Report	Download Stats