mitology
This is the development version of mitology; for the stable release version, see mitology.
Study of mitochondrial activity from RNA-seq data
Bioconductor version: Development (3.22)
mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.
Author: Stefania Pirrotta [cre, aut]
, Enrica Calura [aut, fnd]
Maintainer: Stefania Pirrotta <stefania.pirrotta at unipd.it>
citation("mitology")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mitology")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mitology")| mitology vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO, GeneExpression, Pathways, RNASeq, Reactome, SingleCell, Software, Spatial, Visualization |
| Version | 1.1.2 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | AGPL-3 |
| Depends | R (>= 4.5.0) |
| Imports | AnnotationDbi, ape, circlize, clusterProfiler, ComplexHeatmap, ggplot2, ggtree, magrittr, org.Hs.eg.db, ReactomePA, scales |
| System Requirements | |
| URL | https://github.com/CaluraLab/mitology |
| Bug Reports | https://github.com/CaluraLab/mitology/issues |
See More
| Suggests | Biobase, BiocStyle, GSVA, methods, rmarkdown, knitr, SummarizedExperiment, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mitology_1.1.2.tar.gz |
| Windows Binary (x86_64) | mitology_1.1.0.zip |
| macOS Binary (x86_64) | mitology_1.1.2.tgz |
| macOS Binary (arm64) | mitology_1.1.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mitology |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mitology |
| Bioc Package Browser | https://code.bioconductor.org/browse/mitology/ |
| Package Short Url | https://bioconductor.org/packages/mitology/ |
| Package Downloads Report | Download Stats |