miaDash
This is the development version of miaDash; for the stable release version, see miaDash.
Dashboard for the interactive analysis and exploration of microbiome data
Bioconductor version: Development (3.22)
miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.
Author: Giulio Benedetti [aut, cre]
, Akewak Jeba [ctb]
, Leo Lahti [aut]
Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>
citation("miaDash")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miaDash")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaDash")| miaDash | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, GUI, Microbiome, ShinyApps, Software, Visualization |
| Version | 1.1.5 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0), iSEE(>= 2.19.4), shiny |
| Imports | ape, bluster, htmltools, iSEEtree(>= 1.1.4), mia, rintrojs, scater, scuttle, shinydashboard, shinyjs, shinyWidgets, S4Vectors, SingleCellExperiment, SummarizedExperiment, TreeSummarizedExperiment, utils, vegan |
| System Requirements | |
| URL | https://github.com/microbiome/miaDash |
| Bug Reports | https://github.com/microbiome/miaDash/issues |
See More
| Suggests | BiocStyle, knitr, philr, remotes, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miaDash_1.1.5.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/miaDash |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miaDash |
| Bioc Package Browser | https://code.bioconductor.org/browse/miaDash/ |
| Package Short Url | https://bioconductor.org/packages/miaDash/ |
| Package Downloads Report | Download Stats |