ginmappeR

This is the development version of ginmappeR; for the stable release version, see ginmappeR.

Gene Identifier Mapper

Bioconductor version: Development (3.22)

Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (), NCBI Protein, Nucleotide and Gene (), UniProt () and KEGG (). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.

Author: Fernando Sola [aut, cre] ORCID: 0000-0003-1685-3270 , Daniel Ayala [aut] ORCID: 0000-0003-2095-1009 , Marina Pulido [aut] ORCID: 0000-0003-1633-4294 , Rafael Ayala [aut] ORCID: 0000-0002-9332-4623 , Lorena López-Cerero [aut] ORCID: 0000-0001-8950-4384 , Inma Hernández [aut] ORCID: 0000-0001-8920-6635 , David Ruiz [aut] ORCID: 0000-0003-4460-5493

Maintainer: Fernando Sola <fsola at us.es>

Citation (from within R, enter citation("ginmappeR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ginmappeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ginmappeR")

ginmappeR	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, Genetics, KEGG, Software, ThirdPartyClient
Version	1.5.0
In Bioconductor since	BioC 3.19 (R-4.4) (1.5 years)
License	GPL-3 + file LICENSE
Depends
Imports	KEGGREST, UniProt.ws, XML, rentrez, httr, utils, memoise, cachem, jsonlite, rvest
System Requirements
URL

Suggests	RUnit, BiocGenerics, markdown, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ginmappeR_1.5.0.tar.gz
Windows Binary (x86_64)	ginmappeR_1.5.0.zip
macOS Binary (x86_64)	ginmappeR_1.5.0.tgz
macOS Binary (arm64)	ginmappeR_1.5.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ginmappeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ginmappeR
Bioc Package Browser	https://code.bioconductor.org/browse/ginmappeR/
Package Short Url	https://bioconductor.org/packages/ginmappeR/
Package Downloads Report	Download Stats