Streamer
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.22 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Streamer.
Enabling stream processing of large files
Bioconductor version: Development (3.22)
Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is 'streamed' from disk into R via a `producer' and through a series of `consumers' that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.
Author: Martin Morgan, Nishant Gopalakrishnan
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("Streamer")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Streamer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Streamer")| Streamer: A simple example | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.55.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (14 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, graph, RBGL, parallel, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, Rsamtools(>= 1.5.53), GenomicAlignments, Rgraphviz |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Streamer_1.55.1.tar.gz |
| Windows Binary (x86_64) | Streamer_1.55.1.zip (64-bit only) |
| macOS Binary (x86_64) | Streamer_1.55.1.tgz |
| macOS Binary (arm64) | Streamer_1.55.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Streamer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Streamer |
| Package Short Url | https://bioconductor.org/packages/Streamer/ |
| Package Downloads Report | Download Stats |