SEtools
This is the development version of SEtools; for the stable release version, see SEtools.
SEtools: tools for working with SummarizedExperiment
Bioconductor version: Development (3.22)
This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).
Author: Pierre-Luc Germain [cre, aut]
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
citation("SEtools")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SEtools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SEtools")| SEtools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Software |
| Version | 1.23.3 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | GPL |
| Depends | R (>= 4.0), SummarizedExperiment, sechm |
| Imports | BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/plger/SEtools |
See More
| Suggests | BiocStyle, knitr, rmarkdown, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SEtools_1.23.3.tar.gz |
| Windows Binary (x86_64) | SEtools_1.23.3.zip |
| macOS Binary (x86_64) | SEtools_1.23.3.tgz |
| macOS Binary (arm64) | SEtools_1.23.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SEtools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SEtools |
| Bioc Package Browser | https://code.bioconductor.org/browse/SEtools/ |
| Package Short Url | https://bioconductor.org/packages/SEtools/ |
| Package Downloads Report | Download Stats |