scRNAseq

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.

A Collection of Public Single-Cell RNA-Seq Datasets


Bioconductor version: 3.9

Gene-level read counts of three public scRNA-seq datasets. See vignette for details.

Author: Davide Risso [aut, cre, cph], Michael Cole [aut]

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("scRNAseq")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scRNAseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scRNAseq")
scRNAseq HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData
Version 1.10.0
License CC0
Depends R (>= 3.3), SummarizedExperiment
Imports
System Requirements
URL
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Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me batchelor, clusterExperiment, iSEE, scFeatureFilter, scone, simpleSingleCell, SingleCellExperiment, singleCellTK, SummarizedBenchmark, zinbwave
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scRNAseq_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/scRNAseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scRNAseq
Package Short Url https://bioconductor.org/packages/scRNAseq/
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