pathprintGEOData

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository


Bioconductor version: 3.9

Pathway Fingerprint vectors that have been pre-calculated for ~390,000 publicly available arrays from the GEO corpus, spanning 6 species and 31 platforms. All data are accompanied by their associated metadata.

Author: Gabriel Altschuler, Sokratis Kariotis

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pathprintGEOData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathprintGEOData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathprintGEOData")
pathprintGEOData PDF R Script
Reference Manual PDF

Details

biocViews Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data, OneChannelData, PathwayInteractionDatabase, Rattus_norvegicus_Data, SequencingData, TwoChannelData
Version 1.14.0
License GPL
Depends R (>= 3.4)
Imports
System Requirements
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Suggests pathprint, SummarizedExperiment
Linking To
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Depends On Me
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Suggests Me pathprint
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathprintGEOData_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/pathprintGEOData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathprintGEOData
Package Short Url https://bioconductor.org/packages/pathprintGEOData/
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