TENxBrainData

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TENxBrainData.

Data from the 10X 1.3 Million Brain Cell Study


Bioconductor version: 3.9

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Author: Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TENxBrainData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBrainData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBrainData")
Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version 1.4.0
License CC BY 4.0
Depends SingleCellExperiment, HDF5Array
Imports AnnotationHub(>= 2.9.22), ExperimentHub
System Requirements
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Suggests knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table
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Depends On Me
Imports Me
Suggests Me HDF5Array, simpleSingleCell
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBrainData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/TENxBrainData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxBrainData
Package Short Url https://bioconductor.org/packages/TENxBrainData/
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