TENxBrainData

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TENxBrainData.

Data from the 10X 1.3 Million Brain Cell Study

Bioconductor version: 3.9

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Author: Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TENxBrainData")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBrainData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBrainData")

Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics	HTML	R Script
Reference Manual	PDF

biocViews	ExperimentData, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.4.0
License	CC BY 4.0
Depends	SingleCellExperiment, HDF5Array
Imports	AnnotationHub(>= 2.9.22), ExperimentHub
System Requirements
URL

Suggests	knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	HDF5Array, simpleSingleCell
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	TENxBrainData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/TENxBrainData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxBrainData
Package Short Url	https://bioconductor.org/packages/TENxBrainData/
Package Downloads Report	Download Stats