KEGGandMetacoreDzPathwaysGEO

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see KEGGandMetacoreDzPathwaysGEO.

Disease Datasets from GEO


Bioconductor version: 3.9

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGandMetacoreDzPathwaysGEO")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGandMetacoreDzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")
KEGGandMetacoreDzPathwaysGEO Vignette PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, GEO
Version 1.4.0
License GPL-2
Depends R (>= 2.15.0)
Imports Biobase, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGandMetacoreDzPathwaysGEO_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url https://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
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