GGdata

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GGdata.

all 90 hapmap CEU samples, 47K expression, 4mm SNP


Bioconductor version: 3.9

data exemplars dealing with hapmap SNP reports, GWAS, etc.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGdata")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GGdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, Genome, HapMap, MicroarrayData, SNPData, SequencingData
Version 1.22.0
License LGPL
Depends R (>= 2.12.0), methods, Biobase(>= 2.5.5), GGBase, snpStats, illuminaHumanv1.db, AnnotationDbi
Imports
System Requirements
URL
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Suggests
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Enhances GGtools
Depends On Me eQTL
Imports Me
Suggests Me crlmm, GGtools
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GGdata_1.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/GGdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GGdata
Package Short Url https://bioconductor.org/packages/GGdata/
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