diffcoexp
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see diffcoexp.
Differential Co-expression Analysis
Bioconductor version: 3.9
A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.
Author: Wenbin Wei, Sandeep Amberkar, Winston Hide
Maintainer: Wenbin Wei <W.Wei at sheffield.ac.uk>
citation("diffcoexp")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("diffcoexp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("diffcoexp")| About diffcoexp | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL (>2) |
| Depends | R (>= 3.5), WGCNA, SummarizedExperiment |
| Imports | stats, DiffCorr, psych, igraph, BiocGenerics |
| System Requirements | |
| URL | https://github.com/hidelab/diffcoexp |
See More
| Suggests | GEOquery |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | diffcoexp_1.4.0.tar.gz |
| Windows Binary | diffcoexp_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | diffcoexp_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/diffcoexp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/diffcoexp |
| Bioc Package Browser | https://code.bioconductor.org/browse/diffcoexp/ |
| Package Short Url | https://bioconductor.org/packages/diffcoexp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |