bioCancer
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see bioCancer.
Interactive Multi-Omics Cancers Data Visualization and Analysis
Bioconductor version: 3.9
bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.
Author: Karim Mezhoud [aut, cre]
Maintainer: Karim Mezhoud <kmezhoud at gmail.com>
Citation (from within R, enter
citation("bioCancer")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bioCancer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bioCancer")| bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | AGPL-3 | file LICENSE |
| Depends | R (>= 3.4.0), radiant.data (>= 0.9.1), cgdsr (>= 1.2.6), XML (>= 3.98) |
| Imports | DT (>= 0.3), dplyr (>= 0.7.2), shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, shinythemes, Biobase, geNetClassifier, AnnotationFuncs, org.Hs.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (>= 0.7), visNetwork, htmlwidgets, plyr, tibble |
| System Requirements | |
| URL | http://kmezhoud.github.io/bioCancer |
| Bug Reports | https://github.com/kmezhoud/bioCancer/issues |
See More
| Suggests | BiocStyle, rmarkdown, knitr, testthat (>= 0.10.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bioCancer_1.12.0.tar.gz |
| Windows Binary | bioCancer_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | bioCancer_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bioCancer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bioCancer |
| Bioc Package Browser | https://code.bioconductor.org/browse/bioCancer/ |
| Package Short Url | https://bioconductor.org/packages/bioCancer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |