OmicsLonDA
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OmicsLonDA.
Omics Longitudinal Differential Analysis
Bioconductor version: 3.9
Statistical method that provides robust identification of time intervals where omics features (such as proteomics, lipidomics, metabolomics, transcriptomics, microbiome, as well as physiological parameters captured by wearable sensors such as heart rhythm, body temperature, and activity level) are significantly different between groups.
Author: Ahmed A. Metwally, Tom Zhang, Michael Snyder
Maintainer: Ahmed A. Metwally <ametwall at stanford.edu>
citation("OmicsLonDA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OmicsLonDA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OmicsLonDA")| OmicsLonDA Package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Lipidomics, Metabolomics, Microbiome, Proteomics, Regression, Software, Survival, TimeCourse, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6) |
| Imports | SummarizedExperiment, gss, plyr, zoo, pracma, ggplot2, BiocParallel, parallel, grDevices, graphics, stats, utils, methods, BiocGenerics |
| System Requirements | |
| URL | https://github.com/aametwally/OmicsLonDA |
| Bug Reports | https://github.com/aametwally/OmicsLonDA/issues |
See More
| Suggests | knitr, rmarkdown, testthat, devtools, BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OmicsLonDA_1.0.0.tar.gz |
| Windows Binary | OmicsLonDA_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | OmicsLonDA_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OmicsLonDA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OmicsLonDA |
| Bioc Package Browser | https://code.bioconductor.org/browse/OmicsLonDA/ |
| Package Short Url | https://bioconductor.org/packages/OmicsLonDA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |