CancerSubtypes
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CancerSubtypes.
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
Bioconductor version: 3.9
CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.
Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>
Maintainer: Taosheng Xu<taosheng.x at gmail.com>
citation("CancerSubtypes")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CancerSubtypes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CancerSubtypes")| CancerSubtypes | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GeneExpression, Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4), sigclust, NMF |
| Imports | SNFtool, iCluster, cluster, impute, limma, ConsensusClusterPlus, grDevices, survival |
| System Requirements | |
| URL | https://github.com/taoshengxu/CancerSubtypes |
| Bug Reports | https://github.com/taoshengxu/CancerSubtypes/issues |
See More
| Suggests | BiocGenerics, RUnit, knitr, RTCGA.mRNA, RTCGA.clinical |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CancerSubtypes_1.10.0.tar.gz |
| Windows Binary | CancerSubtypes_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | CancerSubtypes_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CancerSubtypes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CancerSubtypes |
| Bioc Package Browser | https://code.bioconductor.org/browse/CancerSubtypes/ |
| Package Short Url | https://bioconductor.org/packages/CancerSubtypes/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |