Anaquin
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Anaquin.
Statistical analysis of sequins
Bioconductor version: 3.9
The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.
Author: Ted Wong
Maintainer: Ted Wong <t.wong at garvan.org.au>
citation("Anaquin")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Anaquin")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Anaquin")| Anaquin - Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software |
| Version | 2.8.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | BSD_3_clause + file LICENSE |
| Depends | R (>= 3.3), ggplot2 (>= 2.2.0) |
| Imports | ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2 |
| System Requirements | |
| URL | www.sequin.xyz |
| Bug Reports | https://github.com/student-t/RAnaquin/issues |
See More
| Suggests | RUnit, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Anaquin_2.8.0.tar.gz |
| Windows Binary | Anaquin_2.8.0.zip |
| Mac OS X 10.11 (El Capitan) | Anaquin_2.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Anaquin |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Anaquin |
| Bioc Package Browser | https://code.bioconductor.org/browse/Anaquin/ |
| Package Short Url | https://bioconductor.org/packages/Anaquin/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |